Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02942 ATGGCCGAAGTCGAAGCTAGCGTTCCAGATCCCACCCAAATCGACGTCAAACTCTTCAACCGCTGGAGCTTCGAAGACGTTCAGGTTCATGATATTTCTCTGGCTGATTACATTGGAGTGTCCCCGTCAAAGCATGCCACATATGTTCCTCACACTGCTGGTAGGTACTCAGTAAAGAGGTTCAGGAAGGCGCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTCATGATGCATGGAAGGAACAATGGAAAGAAGCTCATGGCTGTCAGGATTATCAAGCATGCTATGGAAATCATTCACTTGCTCACTGATCTGAACCCAATTCAGGTCATCGTTGATGCCGTCATCAATAGTGGTCCCCGTGAAGATGCAACTAGAATTGGTTCTGCTGGAGTGGTGAGGAGACAGGCCGTTGATATCTCACCCCTTCGACGTGTTAATCAGGCCATCTATCTTCTAACAACAGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGTCTATCGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGTTCATCCAACAGTTATGCAATTAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAACCGTTAA 615 0.4634 MAEVEASVPDPTQIDVKLFNRWSFEDVQVHDISLADYIGVSPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02942 204 ProSitePatterns Ribosomal protein S7 signature. 70 96 IPR020606 GO:0003723|GO:0003735|GO:0006412
Pumo3g02942 204 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 204 IPR000235 GO:0006412
Pumo3g02942 204 FunFam 40S ribosomal protein S5 2 204 - -
Pumo3g02942 204 NCBIfam 30S ribosomal protein S7 16 204 IPR005716 GO:0003735|GO:0006412|GO:0015935
Pumo3g02942 204 Gene3D Ribosomal protein S7 domain 2 204 IPR036823 -
Pumo3g02942 204 CDD uS7_Eukaryote 17 204 IPR005716 GO:0003735|GO:0006412|GO:0015935
Pumo3g02942 204 SUPERFAMILY Ribosomal protein S7 17 204 IPR036823 -
Pumo3g02942 204 Pfam Ribosomal protein S7p/S5e 58 204 IPR023798 -
Pumo3g02942 204 PANTHER RIBOSOMAL PROTEIN S7 14 204 IPR000235 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02942 Pumo-Chr3 52445294 52448012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02942 2 204 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 88.177 2.88e-136 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02942 K02989 - gmx:100803239 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02942 3 52445294 52448012 Pumo3g02942 3 52445294 52448012 ECH