Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02938 ATGGAGCTGCCTACAACCGATGTGGACCTTGGGCCTAAGAAGATTGAACCTGAGAAAGAGGAAGGTCCCTTGTTGCATTGTGATTTTTGTGATACAGAAGTAGTGCACAAGCTGGCTCAAATGTTCCTGCCAGGACTAGCCTGTGCCTGTGTTGACAACACAACAGGAGATCTCTTCAAGACCCCCGGTTCGGTGGCCGTTGATTTGAGAAAGGAGATGATAGAATTTGTCACCCAAAAGAGCGAATCGTTTGTTGCCGAGTCTGTTATCTTAGAGGGTGGTCCTGATGGTGGAGTGCTGGAACACCCTTTTGCTGTCATATCTTATTTTGTTGATGAGTTTGTTAATTCCAAGAGGAATTTGTTGAGCCAGGTTTCAGAGTGGCTGCTGAGTGATAAGAGAGAGGACAAGATAGATGATTTTGTTCAGGAGATGGAGATGAATGGCTTTTGGCCACTGGATAGAAGAGAAACACTTGCAAAAACCTTGCTCAAGAATGTTGACTTCAAGAGCTCATTCCATTGCAGCATGAGTTTTAAGTCTGCGCAGGATCTCGCCAACCATGTTGATGCTTGCAACTTCAGGCCTGTGATCTGCCAAAATGAGGGGTGTGATGCCAGGTTCACTGCTGGTCATTTGAAAGAGCATGATTCAGCTTGTGATTTCAAGATAGTTCCATGTGAACAGCAGTGCACAGATAGCATTTTGAGGCGCGAGATGGATAGACACTGCATAACTCTTTGTCCAATGAAGCTAGTGAATTGCCCTTTCTATGCAGTGGGTTGTAGATCTGCTGTTGCACAAAGTATGATTAGAAAACATTGTTCAGATGATGTTGAGTCTCACTTATTGCTCATGCTTAATGGCATTCACCAGGAAGCATCAGGTGAAGATCTTAAACGGCGTGTGGAGCAAATTGTACAGGCATCATCAAGAAGCAAATTAGCAGAGGCTCAGGATGTGAGATCTTTTAAAAATATTGTCAAGGACCTTGAAGTTAAGCTAGGGCCTCTTGAAGTCAGTGCCAAAGAGAAGACTAGTGCAGAAACAGTTGCCAAGAATGAAGACAGTGAAGACAGTAGCACCAAAACAAAGGACAAGGACCAGCACACACAAGCTTTGAATTCATTGGATAAAGCTGAAGAGAGTGCCATCTTGGATAAGACTAGTGCAGAGAATGCTGTCAATAATGAAGATAAGGAAAATGGAAAGCAAGGTTAG 1221 0.4382 MELPTTDVDLGPKKIEPEKEEGPLLHCDFCDTEVVHKLAQMFLPGLACACVDNTTGDLFKTPGSVAVDLRKEMIEFVTQKSESFVAESVILEGGPDGGVLEHPFAVISYFVDEFVNSKRNLLSQVSEWLLSDKREDKIDDFVQEMEMNGFWPLDRRETLAKTLLKNVDFKSSFHCSMSFKSAQDLANHVDACNFRPVICQNEGCDARFTAGHLKEHDSACDFKIVPCEQQCTDSILRREMDRHCITLCPMKLVNCPFYAVGCRSAVAQSMIRKHCSDDVESHLLLMLNGIHQEASGEDLKRRVEQIVQASSRSKLAEAQDVRSFKNIVKDLEVKLGPLEVSAKEKTSAETVAKNEDSEDSSTKTKDKDQHTQALNSLDKAEESAILDKTSAENAVNNEDKENGKQG 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02938 406 SUPERFAMILY TRAF domain-like 203 275 - -
Pumo3g02938 406 Pfam TRAF-type zinc finger 216 274 IPR001293 GO:0008270
Pumo3g02938 406 MobiDBLite consensus disorder prediction 346 386 - -
Pumo3g02938 406 ProSiteProfiles Zinc finger TRAF-type profile. 216 272 IPR001293 GO:0008270
Pumo3g02938 406 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 24 390 - -
Pumo3g02938 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 280 IPR013083 -
Pumo3g02938 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 219 IPR013083 -
Pumo3g02938 406 MobiDBLite consensus disorder prediction 342 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02938 Pumo-Chr3 52389469 52392867 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02938 zf-TRAF 2.3e-10 CL0389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02938 - - gsj:114391789 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02938 3 52389469 52392867 Pumo3g02938 3 52389469 52392867 ECH
Pumo5g03314 5 82306949 82311713 Pumo3g02938 3 52389469 52392867 PCT