Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02930 ATGGCTGTGGCGCCTTTACTCTCACGCCGCTTCTTCAAAAAACCGTTTCCCCTCTTCTCCTTCCATTCCTCATTCTCCATCTCATCATGGCCGCCACCGCCACCTCCCATCCGAGTCGCCCTCACCGAGTCCGTGGGCCGCGCCGTCTTCGCCACCCGCCCCATCGCCGCCGGCGACCTCATCCACACCGCCACCCCCGCCGTCTGCCACCCCTCCTCCGCCCACGCCGCCTGCTACACCTGCCTCGCCGCGCTCCCCCACTCCCAACCTCACCGCGTGAGCATTCCCTTTTGCAGCCAACACTGCCACCAACGCTCCAAGGGATATTACGATGTTGAGATGAAAGCGAATTGGGTGGCTTTTAATCACTATTGCTGGACCCATGGTTTGAAATATCCCTTTCTGGTAAAGCGGTTGGCTTGCATGGTCATATCAGGAGATGCCAGAAGTGACACTCTTGACATACTTCAACCTGCCAATTTGACACCTGAAATGGTTTTAGAGATGGAAGAGGAGTTTGTCTTGCTAAGGAATGCCTTCACAAAGGCACTTATTGCAGACGAACATATTGCCTTTTTAACTAAGCAATGGTACATTGACATTTTGGCAAGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGAGGACTATATGAAGATCTTCTTGCATCAGCAGTTGCATCTGTGGAAGCTGAAGCTGCTGTCGGGAATGCTGTCTATATACTTCCATCCTTCTACAATCATGATTGTGATCCTAATGCACACATTATATGGATAGATAACGCTGATGCAAAATTGAAGGCACTCCGTGACATTGATGAAGGTGAAGAACTCAGAATCTGCTATATTGATGCCAGCCTGGACCGCGATGCTCGGCGAGAGCTACTGTTTCGAGGTTTTGGTTTTCAATGCAATTGTAGTAGGTGCTTGCATGGCGATTAG 945 0.5058 MAVAPLLSRRFFKKPFPLFSFHSSFSISSWPPPPPPIRVALTESVGRAVFATRPIAAGDLIHTATPAVCHPSSAHAACYTCLAALPHSQPHRVSIPFCSQHCHQRSKGYYDVEMKANWVAFNHYCWTHGLKYPFLVKRLACMVISGDARSDTLDILQPANLTPEMVLEMEEEFVLLRNAFTKALIADEHIAFLTKQWYIDILARIRINAFRIELAGGLYEDLLASAVASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNADAKLKALRDIDEGEELRICYIDASLDRDARRELLFRGFGFQCNCSRCLHGD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02930 314 Gene3D SET domain 48 310 IPR046341 -
Pumo3g02930 314 CDD SET_SMYD 237 310 - -
Pumo3g02930 314 SMART set_7 35 290 IPR001214 GO:0005515
Pumo3g02930 314 Pfam SET domain 46 283 IPR001214 GO:0005515
Pumo3g02930 314 Gene3D - 128 209 - -
Pumo3g02930 314 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 33 312 - -
Pumo3g02930 314 ProSiteProfiles SET domain profile. 35 284 IPR001214 GO:0005515
Pumo3g02930 314 Gene3D - 77 127 - -
Pumo3g02930 314 SUPERFAMILY SET domain 33 310 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02930 Pumo-Chr3 52149579 52159775 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo3g02930 SET 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02930 - - gmx:100801270 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02930 3 52149579 52159775 Pumo3g02930 3 52149579 52159775 ECH