LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g02926	ATGGTGGTCCAGCTCCTCATCAGGGTGGTTACTTTAAAGCTGATCATGGGCGGCAGCAAGGGTATGGTTCTGGTTTTCAGAGTGGTGGTGGTGGTGGTGGTGGCTGGAATGGTAGAGGGGCAGGGGAGGGACCGTGGGAGGCGTGAGGTGAACCCTTTTGAGAAAGATGAAGCCGAGGATCAATCGTTTGGCGAGCAAGAGAACACGGGGATTAACTTTGATGCATATGATGATATCCCTGTGGAGACTAGCGGGGAGAATGTGCCACCGCCTGTGAATACGTTTGCCGAAATAGATTTGGGTGAGGCATTGAATCAGAATATACAGAGATGCAAGTATGTGAAACCAACCCCGGTTCAGAGGTATGCCATTCCAATTTCCCTTGCGGGGCGAGACTTGATGGCCTGTGCTCAGACTGGGTCAGGAAAGACGGCTGCCTTTTGCTTCCCTATTATAAGTGGAATCATGAGGGAGCAATATGCTCAGAGACCACGTGTGGCACGAACTGCTTTTCCGCTGGCACTTATCCTCTCCCCTACACGGGAGCTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAAGTGGTGGTTGCTTATGGAGGAGCACCAATCACCCAACAGTTACGGGAGCTTGAGAGAGGCGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTCGGGTTTCATTGCAGATGATAAGATACTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAAATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGTTGTTTAGTGCCACATTTCCCAAAGAGATACAGAGACTTGCATCGGATTTTCTTTCAAGTTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAATATGTGCTCGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGGGAAACTGGAATTAATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCGTTCAAGACTGGAAACACACCAATTCTAGTGGCAACAGATGTTGCAGCACGTGGTCTTGACATCCCACGGGTAGCGCACGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACGGGGCGGGCTGGTAAAATGGGATTAGCAACGGCCTTCTTCAACGAAGGTAATTTGAACTTGGCTAAACCATTGGCTGATCTAATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACCCGTTATGCGGCAAGGGCTGCTTACAGTGGTGGCAACAGAAATAGGAAGTCAGGGGGATCCCGTTTCGGTGGCCGCGATTTTAGGAGAGAGGGCTCATTTAATAAAGCAACAGATTACTATGGTGGCGGAACTGGTGGTGGATATGGTGGCAATTATGGTGGAGGGTATGGTCAAGGTGTGACAAGTGCTTGGGATTAG	1647	0.4803	MVVQLLIRVVTLKLIMGGSKGMVLVFRVVVVVVVAGMVEGQGRDRGRREVNPFEKDEAEDQSFGEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYAQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGINGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNEGNLNLAKPLADLMQEANQEVPAWLTRYAARAAYSGGNRNRKSGGSRFGGRDFRREGSFNKATDYYGGGTGGGYGGNYGGGYGQGVTSAWD	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g02926	548	FunFam	ATP-dependent RNA helicase RhlB	311	490	-	-
	Pumo3g02926	548	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	63	486	-	-
	Pumo3g02926	548	Gene3D	-	311	491	IPR027417	-
	Pumo3g02926	548	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	93	121	IPR014014	GO:0003724
	Pumo3g02926	548	SMART	helicmild6	366	447	IPR001650	-
	Pumo3g02926	548	CDD	DEADc_DDX3_DDX4	94	314	IPR044763	GO:0003724\|GO:0005524
	Pumo3g02926	548	FunFam	Probable ATP-dependent RNA helicase DDX4	55	310	-	-
	Pumo3g02926	548	MobiDBLite	consensus disorder prediction	44	59	-	-
	Pumo3g02926	548	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	335	486	IPR001650	-
	Pumo3g02926	548	Gene3D	-	48	310	IPR027417	-
	Pumo3g02926	548	Pfam	Helicase conserved C-terminal domain	332	447	IPR001650	-
	Pumo3g02926	548	CDD	SF2_C_DEAD	320	456	-	-
	Pumo3g02926	548	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	124	308	IPR014001	-
	Pumo3g02926	548	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	173	462	IPR027417	-
	Pumo3g02926	548	SMART	ultradead3	112	323	IPR014001	-
	Pumo3g02926	548	Pfam	DEAD/DEAH box helicase	117	297	IPR011545	GO:0003676\|GO:0005524
	Pumo3g02926	548	MobiDBLite	consensus disorder prediction	44	65	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g02926	Pumo-Chr3	52082494	52092047	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g02926	91	479	Eukaryotic Initiation Factors Gene Family	AT3G19760	30.848	1.64e-61	206

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g02926	K11594		-	gmx:100818326	924.85