Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02908 ATGGATTTCTGCACCAGGAACGGTAATGCGGAGTTTGGAGGCAGAAACAAGAGAGATCAGCATGAGGGTGACGGTTCTAGAGCCAGTGACGACGATGAAAATGGCTCAACGAGGAAGAAACTCAGACTCTCCAAAGAACAATCAGCTTTTCTCGAAGAAAGTTTCAAAGAACACACCACTCTCAATCCAAAGCAAAAACTTGCTTTGGCAAAACAGTTGAATCTCCGTCCTCGTCAAGTGGAAGTTTGGTTTCAAAACAGAAGGGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACCCTAACAGAAGAGAATAGGAGGTTGCAGAAGGAACTTCAAGAACTTAGAGCCTTGAAAACTTCTCAACCATTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCTACAAATTCCACCACAACTAACCAAACTTCCACAGTTAACAATAACAATGCTTCTCAAATCCCAGTGGAGTTGTCTCTCAGCAAGCCCAGATTATTGCCCTTCCCTAATGGCCAGGCCCAAGCCCCCCAAGCCCATCAAATAGCCTCTTCATGA 609 0.4532 MDFCTRNGNAEFGGRNKRDQHEGDGSRASDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSTVNNNNASQIPVELSLSKPRLLPFPNGQAQAPQAHQIASS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02908 202 CDD homeodomain 38 95 IPR001356 GO:0003677
Pumo3g02908 202 SMART HOX_1 36 98 IPR001356 GO:0003677
Pumo3g02908 202 Pfam Homeodomain 38 92 IPR001356 GO:0003677
Pumo3g02908 202 Gene3D - 42 92 - -
Pumo3g02908 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 15 167 - -
Pumo3g02908 202 Coils Coil 100 130 - -
Pumo3g02908 202 ProSiteProfiles 'Homeobox' domain profile. 34 94 IPR001356 GO:0003677
Pumo3g02908 202 MobiDBLite consensus disorder prediction 1 43 - -
Pumo3g02908 202 SMART halz 94 137 IPR003106 GO:0006355|GO:0043565
Pumo3g02908 202 SUPERFAMILY Homeodomain-like 28 95 IPR009057 -
Pumo3g02908 202 ProSitePatterns 'Homeobox' domain signature. 69 92 IPR017970 GO:0000981|GO:0006355
Pumo3g02908 202 Pfam Homeobox associated leucine zipper 94 128 IPR003106 GO:0006355|GO:0043565
Pumo3g02908 202 FunFam Homeobox-leucine zipper protein 18 23 99 - -
Pumo3g02908 202 MobiDBLite consensus disorder prediction 12 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02908 Pumo-Chr3 51362801 51365010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02908 14 191 Homeobox Transcription Factor Family AT4G37790 60.406 4.90e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo3g02908 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02908 K09338 - gmx:100779138 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02908 3 51362801 51365010 Pumo3g02908 3 51362801 51365010 ECH
Pumo5g02677 5 72936841 72938651 Pumo3g02908 3 51362801 51365010 PCT