Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02904 ATGGCAGCAGAAGCAAATGGCAACACCAATTTCTGCATTAACAATGGGATCAGTGCTGCGGACCCGTTGAACTGGGGCGCTGCCGCGGAGGCCATGACGGGGAGCCACCTCGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCCGTCGTGAAGCTCGGCGACGAGACCCTGACGATCTCGCAGGTGGCGGCGATCGCGGCGCACGACCAGGGGGTGAAGGTGGAGCTGGCCGAGTCCTCCAGGGCCGGCGTTAAGGCCAGCAGCGACTGGGTGATGGAGAGCATGGACAAGGGCACTGACACCTACGGTATCACCACCGGGTTCGGTGCCACCTCCCACCGTAGAACCAAACAAGGTGGCACCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCCAATTGCACCCTACCCCACACAACAACCAGAGCAGCTATGCTAGTGAGAATCAACACACTTCTCCAAGGGTACTCAGGTATTAGGTTTGAAATTTTGGAGGCCATCACCAAGCTTTTGAACAACAACATCACACCATGCTTGCCACTTAGGGGTACAATCACAGCATCTGGTGATATTATTCCTTTGTCTTACATTGCTGGTTTGCTAATTGGTAGACCAAACTCCAAGGCTGTTGGACCCTCTGGGGAAATCTTGAATGCCAAGGAAGCCTTTGAGTTGGCCAACATTGGTTCTGAGTTCTTTGAGTTGCAACCAAAGGAAGGCCTTGCCCTTGTGAATGGAACTGCTGTTGGTTCTGGCTTGGCTTCTATTGTGCTCTTTGAAGCAAACATCCTTGTTGTCTTGTCTGAGGTTATTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAGCCTGAGTTCACTGACCATTTGACTCATAAACTAAAGCACCACCCTGGACAGATTGAAGCTGCTGCTATTATGGAACACATTTTGGAAGGAAGCTCTTACATCAAAGCTGCTAAGAAGTTGCATGAGATTGATCCTTTGCAAAAGCCTAAACAAGACCGTTATGCACTTAGAAGTTCACCCCAATGGCTTGGTCCTCAAATTGAAGTGATCAGATTTTCTACCAAGTCAATTGAGAGGGAGATAAACTCAGTCAATGACAACCCTTTGATTGATGTGTCAAGGAACAAGGCCCTTCATTGTGGTAACTTCCAAGGAACCCCCATTGGAGTCTCCATGGATAACACCCGTTTGGCTCTTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGGCTATTACAACAATGGCTTGCCTTCAAATCTCACAGCCAGCAGAAACCCCAGCTTGGATTATGGATTCAAGGGAGCTGACGTTGCCATGGCATCATATTGTTCTGAACTCCAATACTTGGCTAACCCGGTAACCAGCCATGTGCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGGTTGATTTCATCAAGGAAGACACATGAGGCTATTGAGATCCTCAAGCTCATGTCCTCCACCTTCCTTATTGCACTTTGCCAAGCCATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACAGTCAAGAATGTTGTGAGCCAAGTTGCCAAGAGGACTCTCACCACAGGTGTCAATGGAGAGCTTCACCCTTCAAGATTCTGTGAAAAAGACTTGCTGAAGGTTGTTGATAGGGAGTACACATTTGCCTACATTGATGACCCCTGCAGTGGCACATACCCTCTGATGCAAAAACTAAGGCAAGTGCTTGTGGACTATGCATTGGCCAATGGGGATAGTGAGAAAAACTTGAACACCTCAATCTTCCAAAAGATTGAAACATTTGAGGAGGAGTTGAAGGCCCTTTTGCCTAAGGAAGTGGAAGGTGCAAGACTTGCATATGAGAATGACCAATGTGCAATTCCCAACAAGATCAAGGAATGTAGGTCTTACCCCTTGTACAAGTTTGTGAGAGAGAAGTTGGGGACAGCTTTGCTAACCGGTGAAAAGGTTATCTCACCGGGTGAAGAGTGTGACAAAGTGTTCACTGCCATGTGCCAAGGGAAAATCGTTGATCCACTTTTGGAATGCCTTGGAGAGTGGAATGGTGCCCCTCTTCCAATTTGTTAG 2139 0.4778 MAAEANGNTNFCINNGISAADPLNWGAAAEAMTGSHLDEVKRMVEEYRRPVVKLGDETLTISQVAAIAAHDQGVKVELAESSRAGVKASSDWVMESMDKGTDTYGITTGFGATSHRRTKQGGTLQKELIRFLNAGIFGNGTESNCTLPHTTTRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDIIPLSYIAGLLIGRPNSKAVGPSGEILNAKEAFELANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILVVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYIKAAKKLHEIDPLQKPKQDRYALRSSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHCGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNGYYNNGLPSNLTASRNPSLDYGFKGADVAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTHEAIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGDSEKNLNTSIFQKIETFEEELKALLPKEVEGARLAYENDQCAIPNKIKECRSYPLYKFVREKLGTALLTGEKVISPGEECDKVFTAMCQGKIVDPLLECLGEWNGAPLPIC 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02904 712 Pfam Aromatic amino acid lyase 59 539 IPR001106 -
Pumo3g02904 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824
Pumo3g02904 712 PANTHER HISTIDINE AMMONIA-LYASE 15 712 IPR001106 -
Pumo3g02904 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Pumo3g02904 712 NCBIfam phenylalanine ammonia-lyase 21 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pumo3g02904 712 FunFam Phenylalanine ammonia-lyase 259 566 - -
Pumo3g02904 712 Gene3D - 525 646 IPR023144 -
Pumo3g02904 712 Gene3D - 12 258 IPR024083 -
Pumo3g02904 712 CDD PAL-HAL 57 522 IPR001106 -
Pumo3g02904 712 FunFam Phenylalanine ammonia-lyase 525 646 - -
Pumo3g02904 712 FunFam Phenylalanine ammonia-lyase 12 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02904 Pumo-Chr3 51039279 51053161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02904 17 712 Monolignol Biosynthesis Gene Families AT2G37040 81.897 0.0 1216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02904 K10775 - gmx:100803857 1349.34