Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02903 ATGTTCCCTGGGATTGCTGATAGGATGAGCAAGGAGATCACAGCATTGGCACCAAGCAGCATGAAGATTAAGGTGGTGGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGATGTGGATTGCAAAGGCAGAATATGATGAATCAGGCCCCTCAATTGTTCACAGGAAATGCTTCTAA 216 0.4815 MFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02903 71 Pfam Actin 1 71 IPR004000 -
Pumo3g02903 71 Gene3D - 1 34 - -
Pumo3g02903 71 FunFam Actin, alpha skeletal muscle 10 71 - -
Pumo3g02903 71 SUPERFAMILY Actin-like ATPase domain 1 71 IPR043129 -
Pumo3g02903 71 PANTHER ACTIN 1 64 IPR004000 -
Pumo3g02903 71 ProSitePatterns Actins signature 2. 52 60 IPR004001 -
Pumo3g02903 71 Gene3D - 35 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02903 Pumo-Chr3 50893674 50894574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02903 1 71 Cytoskeleton Gene Families AT3G12110 100.000 1.31e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02903 K10355 - sly:101253675 145.976
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02903 3 50893674 50894574 Pumo3g02903 3 50893674 50894574 ECH
Pumo5g02665 5 72809702 72812594 Pumo3g02903 3 50893674 50894574 PCT