Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02900 ATGCCAACAGCAGCGACACCGCGTCGGAGCTCTGTCTCGTTTGGTCCCTATGTACTTCGCCGCCATGTTCGGGTCGGGGAGCTTACGGAGGTGGCGTGCGATGGACCGGAAGGGCTTGAGGACGCATTGGGAACATCGCCAGGGACTCGGTGTTTGGACAGTGAGATGGGGAAGAAGGCGAAGAAAGCTATGAAGAAGAATTTGAAAAGGGCTTCCTTTAATAAGCCATCTGAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGTAAGCTTGCCCAGCAGAAGCCGCCGGAGAATACCGCCACGGTTTTGTATGTGGGTCGGATTCCACATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATTGCAAGAAATAAAAAGTCTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCCGAGGTAGCAAAAGTTGTAGCTGATACTATGCACAATTATCTCCTTTTTGAACACCTTTTGCAAGTTTATTTGATACCTCCAGAGCATGTTCATCCAAGATTATGGAGAGGATTCAATTACCATTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGGAAGAGCACAAGAAATTGGTGGAGAAGATTCTGAAACATGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGATTATGAATGCCCTGAGATTGTGGGTAACATCCAACCTGCTCCAAAGAAAATAAAGTTTGAAGACTGA 795 0.4566 MPTAATPRRSSVSFGPYVLRRHVRVGELTEVACDGPEGLEDALGTSPGTRCLDSEMGKKAKKAMKKNLKRASFNKPSEGADFLPLEGGPARKLAQQKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKSGKSRHFGFIEFESPEVAKVVADTMHNYLLFEHLLQVYLIPPEHVHPRLWRGFNYHYKPLDSVQIERKRHDKERTLEEHKKLVEKILKHDQKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFED 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02900 264 CDD RRM_NIFK_like 105 177 - -
Pumo3g02900 264 Gene3D - 57 179 IPR012677 -
Pumo3g02900 264 SUPERFAMILY RNA-binding domain, RBD 87 192 IPR035979 GO:0003676
Pumo3g02900 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Pumo3g02900 264 SMART rrm1_1 105 178 IPR000504 GO:0003723
Pumo3g02900 264 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 60 263 - -
Pumo3g02900 264 Coils Coil 205 225 - -
Pumo3g02900 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 173 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02900 Pumo-Chr3 50838979 50845148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02900 104 177 Eukaryotic Initiation Factors Gene Family AT1G71770 36.486 1.53e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02900 K14838 - gmx:100778780 402.905