Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02895 ATGGACGTTCGCAAGCGCGGAAGGCTCGACGGTAACCTTAACGGCGCCGTTAAGAAGACCAAGCAAGAATTGGAGTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGTGAGGGTTGCCACTTCTTGCATTACGTTCCCGGTGGTTATAATGCTGTTGCCCATATGATGAATTTAAAACCTGCTGCTCCTCCACCAAGAGCTGTTGCCGCACCACCTCCCGTCCCCAATGGTTCTGCTCCATCTGCTGTTAAATCCCGCATATGTAACAAGTTCAATACCGCTGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGAGAATGGGAACTTGGCAAACCTATTGGTCCATCAATGGATGATCATCATCGTCCTTTGGGACCTCCGGCAGCTGGTCGTATGGCCGGTCGAATCGAGCCTCCTCCCGCATTGGCTGGTAGCTTTGGCGCCATTTCTACCGCCAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGCGAAACTTTCGATTCGAGAGCATGAAACTGATCCAAATCTTAGAAACATTGAACTTGAGGGAACTTTTGAACAGATTAAGGAAGCAAGTAACATGGTAAAAGATTTACTTTTGACTGTGTCAATGTCTGCCCCACCAAAATCCACCCCAGGTGTTGCTGGTGCCCCTGCCCCTCCTGGTAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACCTTTGGAGAGAGATGTCACTTTGCACATGGTGCTGCTGAATTGCGCAAGCCGGGAGTATGA 882 0.4943 MDVRKRGRLDGNLNGAVKKTKQELESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLKPAAPPPRAVAAPPPVPNGSAPSAVKSRICNKFNTAEGCKFGDKCHFAHGEWELGKPIGPSMDDHHRPLGPPAAGRMAGRIEPPPALAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHETDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTPGVAGAPAPPGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRKPGV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02895 293 Gene3D - 91 128 - -
Pumo3g02895 293 Gene3D - 258 290 - -
Pumo3g02895 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Pumo3g02895 293 SMART kh_6 165 235 IPR004087 GO:0003676
Pumo3g02895 293 SMART c3hfinal6 32 59 IPR000571 GO:0046872
Pumo3g02895 293 SMART c3hfinal6 98 123 IPR000571 GO:0046872
Pumo3g02895 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Pumo3g02895 293 FunFam Zinc finger CCCH domain-containing protein 91 128 - -
Pumo3g02895 293 SUPERFAMILY CCCH zinc finger 95 127 IPR036855 GO:0046872
Pumo3g02895 293 Pfam RNA-binding, Nab2-type zinc finger 37 57 - -
Pumo3g02895 293 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
Pumo3g02895 293 CDD KH-I_AtC3H36_like 169 234 - -
Pumo3g02895 293 PANTHER CCCH ZINC FINGER/TIS11-RELATED 21 135 IPR045877 GO:0003729
Pumo3g02895 293 SUPERFAMILY CCCH zinc finger 33 58 IPR036855 GO:0046872
Pumo3g02895 293 Gene3D K Homology domain, type 1 164 257 IPR036612 GO:0003723
Pumo3g02895 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 123 IPR000571 GO:0046872
Pumo3g02895 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 260 284 IPR000571 GO:0046872
Pumo3g02895 293 ProSiteProfiles Zinc finger C3H1-type profile. 32 60 IPR000571 GO:0046872
Pumo3g02895 293 SUPERFAMILY CCCH zinc finger 259 289 IPR036855 GO:0046872
Pumo3g02895 293 ProSiteProfiles Type-1 KH domain profile. 166 230 - -
Pumo3g02895 293 Pfam KH domain 169 231 IPR004088 GO:0003723
Pumo3g02895 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 236 IPR036612 GO:0003723
Pumo3g02895 293 FunFam Zinc finger CCCH domain-containing protein 254 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02895 Pumo-Chr3 50754166 50759649 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo3g02895 KH_1 8.8e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02895 - - gmx:100817463 538.11