Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02894 ATGGCTGCTTGGGAAAGTGATGAAGTACAAACTATTGAGACCCCTGCGACTTTAATCATGGAACGTACAGATATGGCTGAGCTAGAAGTAATTAGGCCACTGAAATGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGAGATCCAACGGGCAATCTGGGAAGAGAGGTTAAAACAGGCCAAGGAACGTGCTGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAAAGACCCATCTACTCAACAACTCTAAGGGATCTTGTTACCTTAAGACATCCTGTATATGATATTCATCAGGTGAAAGCAAACCCTGTTTCATACTTGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCGGTTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGGGCACCCTCTCCTGTTTGCTGGTGCAGTACAAGTGAGACAAATGTGTTTATGCACCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTTACCGCTACTGTCACCTATCAGGCCTGCAATTGTCCGCCGGCAAGTGTATTTCCCCGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTAGCAATTTTGTTGAGGAAATTAAAATCGGAAGGTCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGGTATACATACATGCGCTTAGATGGATCAACCCAGCCAGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACAAACCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCTCTTGATAATCTAGTTATACAAAGTGGGGGTTATAATACTGAATTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAATATGCCGAAGGAGAAAAACCAGAACAATGGGGAAGTTTCTGTAACTAATGCAGATGTTGAGGCTGCATTAAAATGTGTAGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAGACTGCAGAATTAGGTGAATCTGTTTCGAATTTAAATAAAGAGAATGCATTAATGTTAAATGGTAGTGATCATAAGGAAGATAGACCGCCACACTCTGTTGCTGTCACAGAAAATGATCCTGACATGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCACAGCATTTGAGAATGAGCTACGCCCTATTGATCAATATGCCATTCGTTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACGGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCCGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACTATGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAATATGAAGCTAGACAGAAAGAAGCTGAGGAAGAAACTTGTGATTCTAAAAAGACTCAAGCACCAGGGGATTCGAAGCCCAAATCTAAAAAGAAACCCAAGAAGGCAAAGTTCAAATCCCTAAAGAAAGGATCTTTAACCTCTGGCTTGAGACCTGTGAAAGAAGAGCCACAAGCAGAGCCTATGAACATAGATGATGAGGATGTCACTGGTCTAGATTTTCTGTCTCCAAATTCAACCATGCAGAAAAAACGTAAGAAGTCTAAATTAACAACTGATGGTGAAGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCTTCCGATTTTGAATCCAACTCATTAGTTGTGCAGGATGAACATGCAGAATCAAAGACTTGTGAAAGTCTGGTTGATTTGGAACAGAAAACAGCAAGCAGGAGTAAAATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGTGTCTGGATGATAAAACCAGAAAAATTGAAAAAGGGAAATCATTGGTCCAAAGATTGTATTCCGTCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGCGAAACGCTTTATGGCATGACTGCTGGTGGGTCATACAGGGGAAGATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAACTATTCCAAAAGTATGTCTTGTTGTCAATGGACAACGCAAATCATGAGAAGATCAACAGTCCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGCTGTTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTACTGCTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGTCTGGAAGGTGGCATCACACGGTGACCGCAGGCAAAATCCATCACCCACCTGTAATGGTCTCTATTTCGATCAGAGTTTCTATACTTCCATTGGCCAGCCTTCACAAAATTCCTTGAAGAAATCCTCTGAAAGGATGGCATTTGTGAATTTGGCCCAGAGCAAGAAGTTAGTAGCAGCTGCACTTGATGATATCACAACTAGGCAAGTGAATGACAAAGTCATTCTCTCTAACCAAGGGGAAGACATGTCAGTGAGTGCAGATCAGCTGGATATAACTCTGGAGTTCCCGAAAGAGGATAGTGACGTCCTATCTTCATTTCCATCTGTTATAAATTTATCAATACATGGGACTGAACCAACACCATCTTTAAATAAGCAAACAGGAGAAGATGATCTTAAAGTTGGTTTGTTGATTGCTGAGAATCGTTTCAGGGAGGCAGCAAGAGTCTGTGAAGAGGACAGCTCTGGATGGGCTTCATCTGCATTCCCAACTAACGATGCAAGGTCTCGACCTGGATCCAGGATACAATCCTCCGGAAAGCAGAAGTCTTCCGTATCTGACTCTTCTAAGCCTTCTAGGTCAAAGTCCAAAAAAGCTTCAATGGATCCTAGTGAAATGCATCACCATCAGGCTGACTCAATATTCCAGTCAATGCCATCACTTAAGGATCTGAGAATTGATCTCACTTCATTCACTACTGATGAAGTTGGAATTGATGGTATGGATAGCATTTTCTCCTTTGACTTGAATGGGGAAAGTTCATTGGAAACGGAGAGTGTCGGAATGATCCCTCATGATTATGTTACTGGTTTAATCTCAGACCTTGATGATTGTACAGCATTCCCTGAATATACTGACATTGGATAA 3582 0.4157 MAAWESDEVQTIETPATLIMERTDMAELEVIRPLKCQKKLQGTNIFEEIQRAIWEERLKQAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTLRHPVYDIHQVKANPVSYLYSSKLADIVLSPVERFQKMTDVVESFMFAIPAARAPSPVCWCSTSETNVFMHPSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGESVSNLNKENALMLNGSDHKEDRPPHSVAVTENDPDMLADVKQMAAAAAAAGQAITAFENELRPIDQYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARQKEAEEETCDSKKTQAPGDSKPKSKKKPKKAKFKSLKKGSLTSGLRPVKEEPQAEPMNIDDEDVTGLDFLSPNSTMQKKRKKSKLTTDGEEEKRLKKSKKSKRDPPDIYASDFESNSLVVQDEHAESKTCESLVDLEQKTASRSKMGGKISITPMPVKRVWMIKPEKLKKGNHWSKDCIPSADFWLPQEDAILCAVVHEYGPNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELFQKYVLLSMDNANHEKINSPGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSVWKVASHGDRRQNPSPTCNGLYFDQSFYTSIGQPSQNSLKKSSERMAFVNLAQSKKLVAAALDDITTRQVNDKVILSNQGEDMSVSADQLDITLEFPKEDSDVLSSFPSVINLSIHGTEPTPSLNKQTGEDDLKVGLLIAENRFREAARVCEEDSSGWASSAFPTNDARSRPGSRIQSSGKQKSSVSDSSKPSRSKSKKASMDPSEMHHHQADSIFQSMPSLKDLRIDLTSFTTDEVGIDGMDSIFSFDLNGESSLETESVGMIPHDYVTGLISDLDDCTAFPEYTDIG 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02894 1193 Gene3D - 163 455 IPR027417 -
Pumo3g02894 1193 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 206 356 IPR001650 -
Pumo3g02894 1193 PANTHER HELICASE SRCAP-RELATED 25 1091 - -
Pumo3g02894 1193 SMART helicmild6 232 315 IPR001650 -
Pumo3g02894 1193 Gene3D - 787 848 - -
Pumo3g02894 1193 MobiDBLite consensus disorder prediction 1062 1095 - -
Pumo3g02894 1193 Coils Coil 419 439 - -
Pumo3g02894 1193 ProSiteProfiles Myb-like domain profile. 791 844 IPR001005 -
Pumo3g02894 1193 SUPERFAMILY Homeodomain-like 789 846 IPR009057 -
Pumo3g02894 1193 MobiDBLite consensus disorder prediction 608 721 - -
Pumo3g02894 1193 CDD SF2_C_SNF 191 326 - -
Pumo3g02894 1193 Pfam Helicase conserved C-terminal domain 205 315 IPR001650 -
Pumo3g02894 1193 MobiDBLite consensus disorder prediction 608 628 - -
Pumo3g02894 1193 Coils Coil 598 618 - -
Pumo3g02894 1193 MobiDBLite consensus disorder prediction 1096 1114 - -
Pumo3g02894 1193 MobiDBLite consensus disorder prediction 687 715 - -
Pumo3g02894 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 388 IPR027417 -
Pumo3g02894 1193 Coils Coil 543 563 - -
Pumo3g02894 1193 MobiDBLite consensus disorder prediction 1059 1115 - -
Pumo3g02894 1193 FunFam Photoperiod independent early flowering protein 787 848 - -
Pumo3g02894 1193 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 173 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02894 Pumo-Chr3 50674546 50686947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02894 152 335 RAD5 or RAD16-like Gene Family AT5G43530 31.683 5.70e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02894 K11661 - gmx:100794898 2147.86