Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02893 ATGTTGGCAGAAAATCTTGTGGATCCTTATAAATCAGCAGAGAATAATTCTGCAGAGCATCGCATGAGTATTCAATGCAAAGATGTACATGGAGATGTTATTAATGAACCTAAGGAAGCTGATGTTGTGGAGTATCAATCAGATGCAGCTGACAATGATGAAGAATATGATGTACAATCTGATGACGAATCGGAGGATGATGAGCAGACAATTGAGCAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCAGCTTTGCGTGATGAAATGGATCTTCCGATTGAGGAGTTACTTAAACGTTATGCTGGGGAGAAAGGAGAATCTGTAACGAAAGAAAGTAGTCCAGAGCATAGTGAAGATGGTGGGAAAATAGTTAGAGCTGGTGATGGTAAGAAAGGACTAGCATCAGAAAACGGAGATGATCTTTTATCTGCCAGCAAAATTGGCACAAGCAACGCCAGCATGGTCTCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTAGACCAACAAACAATCTATCTCAATGTGAGGATGGTCAATCTGAAAATCTAAAAGAGGTTCCCAGTGAGACAGCCAATGAAGATTTTGCATATGATTTTACTGATGAAGAGGAAGATGGTGACTTTTTGCTTGTCACAGAAGATAAGGATGATGAAACAACCTTATCTGAGGAGGAAAAACTGGAAAGAGTTGATGCAATTGATCCCAAGGATGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGATATAAAAGGGACCCAAGTGATGATGAAGATGGGGAATTTGAATCTGATTATGCTTCTGCTTTATCAGAGGACCATTCGGATTCTCCAGTCCATGAGGATGCTGGGCAGAAGGATCCTGCCGTTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTGCCATACAGTCCCAGGCAGAAGAACAGTGGGAATCACCTCATGAAAATTTGGAAAAAAGAGAAAGTGAGCTTATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCCACTGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTACTCAAGTACTCACTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATATCTTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGCCCACATTTAATTGTGGTACCAACTAGTGTAATGCTTAATTGGGAGACTGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCTAACTCATTTCATGTATGCATCACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATGCAAAACGACGGATTCTCTTGACTGGTACGCCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCTCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAAGAAAAAGTTAATAAGGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGACTTAAGCGAGATGTGGAGAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAAGATTTCATTGCTAGTTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGTGGCATTGATATTCAGTTAAGTTCTTCTGTTTGCTCCATGCTTTTGCCTAGTCCCTTTTCAACGGTGGACCTAAGAGGTTTGGGTCTTTTATTCACTCATCTTGTACTATAG 2145 0.4042 MLAENLVDPYKSAENNSAEHRMSIQCKDVHGDVINEPKEADVVEYQSDAADNDEEYDVQSDDESEDDEQTIEQDEALITKEERQEELAALRDEMDLPIEELLKRYAGEKGESVTKESSPEHSEDGGKIVRAGDGKKGLASENGDDLLSASKIGTSNASMVSGRRCDESNGDVARPTNNLSQCEDGQSENLKEVPSETANEDFAYDFTDEEEDGDFLLVTEDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDDEDGEFESDYASALSEDHSDSPVHEDAGQKDPAVPMDEDIKSGEHLAAIQSQAEEQWESPHENLEKRESELIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNAKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSVCSMLLPSPFSTVDLRGLGLLFTHLVL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02893 714 Coils Coil 73 93 - -
Pumo3g02893 714 Gene3D - 623 696 - -
Pumo3g02893 714 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 623 688 - -
Pumo3g02893 714 MobiDBLite consensus disorder prediction 105 131 - -
Pumo3g02893 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 666 IPR027417 -
Pumo3g02893 714 Gene3D - 345 622 IPR038718 -
Pumo3g02893 714 MobiDBLite consensus disorder prediction 171 193 - -
Pumo3g02893 714 MobiDBLite consensus disorder prediction 46 73 - -
Pumo3g02893 714 MobiDBLite consensus disorder prediction 1 22 - -
Pumo3g02893 714 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 554 IPR014001 -
Pumo3g02893 714 MobiDBLite consensus disorder prediction 46 72 - -
Pumo3g02893 714 FunFam Photoperiod-independent early flowering 1 347 622 - -
Pumo3g02893 714 MobiDBLite consensus disorder prediction 281 307 - -
Pumo3g02893 714 MobiDBLite consensus disorder prediction 105 197 - -
Pumo3g02893 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 599 IPR027417 -
Pumo3g02893 714 CDD DEXQc_SRCAP 377 599 - -
Pumo3g02893 714 MobiDBLite consensus disorder prediction 218 307 - -
Pumo3g02893 714 PANTHER HELICASE SRCAP-RELATED 1 712 - -
Pumo3g02893 714 MobiDBLite consensus disorder prediction 229 271 - -
Pumo3g02893 714 Pfam SNF2-related domain 394 666 IPR000330 GO:0005524|GO:0140658
Pumo3g02893 714 MobiDBLite consensus disorder prediction 147 163 - -
Pumo3g02893 714 SMART ultradead3 373 566 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02893 Pumo-Chr3 50667500 50674544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02893 397 669 RAD5 or RAD16-like Gene Family AT5G43530 28.882 1.78e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo3g02893 SNF2_N 9e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02893 K11661 - gmx:100795613 1313.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02893 3 50667500 50674544 Pumo3g02893 3 50667500 50674544 ECH