Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02884 ATGAACGAGAACAGGATTGGTTGTGTAGGACGGATTCAACAAAGCTACGGTCTTAATGGTGATTTAAATTCTGAGTTTGGCAATTGTTCTAGTCAATATTTTGACATAAGACAGGCTTCAAATATGGCAAGTTGCAATCAGCCACTTGCCATGGCCAATGGTGGAGGATTGGAACAAGAACCATACATAATAGGCCAAACCAAATCACCTAGCAGCATTATCAGCCGTTTTGAGTCACCAGCTTCAGCCTTTTATGCAACAGAAATCTGCATGGGTTTCCCACAATATGATAGCCAAGTTGGTAATCCCTCTTTGATGTCTCAATTCTCTAAGATTAGTGATATGGAATTTCCTTTGTATCAATCTCCCAGGCAAAGCCTTTTCATGGCTTCATTAGCAAACCAACCTCCCCCCAACTTTGAGTTGTCAAATCCCTTGCAAGAAATGCTCAAATCCCATTTGAATAGTGATCAATGTGTTGGATCTCCTGAAAAATCTAATAAAATCCCATGTGGGGATTTTCCTGGCAGCAATTTTCTTCCAATTGAACAACACAAGTTGTTCATTGATGATGCTACCTCAATTAGTAGAACCCCTTCAATTCCTTCTAAAGGAAATCAGGATCAAACAGTTTCTTGTGGCTCATACAATTTACCTGCTGCACAGCTTAGCTTCTCTTCTCAGCAAGAGATGCTGTCTCCAACAGGTAGCATGTCAACTACTTCTGGAAACTCTGCTTCAAATGGACCAGTAGTTTCAAGTAAAACAAGAATAAGATGGACTCAGGAACTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCGCCGAGAAAGCAACACCAAAAGCTGTATTGAGGCTGATGGATTCAGATGGATTGACCATCTTCCATGTTAAAAGTCATTTGCAGAAATATAGAATTGCCAAATTCATGCCACAGTCAACTCAAGGGAAATCTGAAAAAAGAACCAATGTAGAAAATGTGCATCTTGATGCAAAAACTGGCTTGCAAATTAGAGAGGCACTTCAGTTGCAGCTAGATGTTCAGCGGCGTCTTCATGAACAGCTAGAGATTCAGAGAAAATTACAGTTGAGGATTGAGGAGCAAGGTAAGCAGCTGAAGATGATGTTTGACCAACAGCAGAAGACAAGTGATAGCATTAGCAGCCACTTGATTACTGAGAATAATGATAGACCAATTAGTTCTAAAGATGTTCTGGTTTCCATTTCTGAAGGGTCTGAAAATTCCTTATTCTCTTCCAAGATAAGTTAG 1278 0.4022 MNENRIGCVGRIQQSYGLNGDLNSEFGNCSSQYFDIRQASNMASCNQPLAMANGGGLEQEPYIIGQTKSPSSIISRFESPASAFYATEICMGFPQYDSQVGNPSLMSQFSKISDMEFPLYQSPRQSLFMASLANQPPPNFELSNPLQEMLKSHLNSDQCVGSPEKSNKIPCGDFPGSNFLPIEQHKLFIDDATSISRTPSIPSKGNQDQTVSCGSYNLPAAQLSFSSQQEMLSPTGSMSTTSGNSASNGPVVSSKTRIRWTQELHEKFVECVNRLGGAEKATPKAVLRLMDSDGLTIFHVKSHLQKYRIAKFMPQSTQGKSEKRTNVENVHLDAKTGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKTSDSISSHLITENNDRPISSKDVLVSISEGSENSLFSSKIS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02884 425 SUPERFAMILY Homeodomain-like 253 309 IPR009057 -
Pumo3g02884 425 FunFam Myb family transcription factor 254 312 - -
Pumo3g02884 425 Gene3D - 254 313 - -
Pumo3g02884 425 Pfam MYB-CC type transfactor, LHEQLE motif 338 385 IPR025756 -
Pumo3g02884 425 Coils Coil 341 361 - -
Pumo3g02884 425 MobiDBLite consensus disorder prediction 227 254 - -
Pumo3g02884 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 312 IPR017930 -
Pumo3g02884 425 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 236 391 IPR044848 GO:0003700
Pumo3g02884 425 Pfam Myb-like DNA-binding domain 259 308 IPR001005 -
Pumo3g02884 425 NCBIfam myb-like DNA-binding domain, SHAQKYF class 255 310 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02884 Pumo-Chr3 50377849 50380890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02884 238 382 G2-like Transcription Factor Family AT4G28610 60.135 1.45e-50 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo3g02884 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02884 - - gmx:100780919 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02884 3 50377849 50380890 Pumo3g02884 3 50377849 50380890 ECH