Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02882 ATGAGTTCTGGTTCAGTCACCAAAGCACCACCCTCTTCCTCCTCATCACCCAACTCTTCTTCCACTGAGTCCCTTGATGGGTTGAAGTTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGCAGCAGAAACAACAACAACTCAAGGGGGCAAAACAAGTTCTTCAAAGAAGGGAAGGGGTGGTTCAGTGCAAGCAGCTCAGCCTCCTAGGTGTCAGGTTGAGGGCTGCAAAGTAGATCTGAGTGGTGCTAAGGCTTACTATTCTAGGCACAAAGTTTGTGGCATGCACTCCAAGTCCCCTACTGTCATTGTAGCTGGTTTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAATTTGATCAAGGAAAACGAAGCTGCCGCAGGCGACTTGCTGGCCACAATGAGCGCCGTCGAAAGCCCCCACCGAGCTCCATATTAACCTCTCGCTATGGCAGACTTACGTCGCCTATTTTTGATAACAATGGCAGAGCTGGTAGCTTTCTGATGGAATTCGCTTCGTATCCAAAGCTTTCATTGAGAAACACACTGCCAACTCCAAGATCAACCGAGCCAGTTCCTGGGAACCATGCTGCAACACTCACCTGGCAAGGAAGCTCAGACACACCATCTGATTTTTTCCTGCAAGGATCAGGGAGTGGTGGAACAAGCTTCCTCAGTCCCAAACATCCTTTGGTGGAAAGTTACACTGGAGTCACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAGTCAAACCTGGGGTTCCAGAAACACTGCCCCAACAACAAGTGTTGAGCTGAACAACAGCTTGTTGAATTTCAATGGGACATCCATGACACAATTCGCTGCGGCATCTTCACAAGCTGCAGCCGTCCATCAGCTTCCAAATGCCACCTCATGGTTGTACCTAAAGGGCATCGATTCCGGTAATTGTTCGCCCGAGGGTGTCCCCGATCTCGGTCTCGGCCAAATGTCGCCGCCGCCTCTTCATGGCCATCTTCATGGTGAGCTTGATGTGTCACAGCAGGGCAGGAGGCAGTACATGGATCTAGGGGAGACCAGGGCCTGTGAGTCTTGTCACTGGTCACTTTGA 1110 0.5018 MSSGSVTKAPPSSSSSPNSSSTESLDGLKFGQKIYFEDVSVAAETTTTQGGKTSSSKKGRGGSVQAAQPPRCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPTVIVAGLEQRFCQQCSRFHLLSEFDQGKRSCRRRLAGHNERRRKPPPSSILTSRYGRLTSPIFDNNGRAGSFLMEFASYPKLSLRNTLPTPRSTEPVPGNHAATLTWQGSSDTPSDFFLQGSGSGGTSFLSPKHPLVESYTGVTDSNCALSLLSSQTWGSRNTAPTTSVELNNSLLNFNGTSMTQFAAASSQAAAVHQLPNATSWLYLKGIDSGNCSPEGVPDLGLGQMSPPPLHGHLHGELDVSQQGRRQYMDLGETRACESCHWSL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02882 369 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Pumo3g02882 369 MobiDBLite consensus disorder prediction 136 156 - -
Pumo3g02882 369 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Pumo3g02882 369 FunFam Squamosa promoter-binding-like protein 14 63 133 - -
Pumo3g02882 369 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
Pumo3g02882 369 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 336 IPR044817 GO:0003677
Pumo3g02882 369 MobiDBLite consensus disorder prediction 45 69 - -
Pumo3g02882 369 Pfam SBP domain 72 145 IPR004333 GO:0003677
Pumo3g02882 369 MobiDBLite consensus disorder prediction 1 25 - -
Pumo3g02882 369 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02882 Pumo-Chr3 50333627 50339233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02882 28 369 SBP-box Gene Family AT2G42200 45.055 3.86e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo3g02882 SBP 6.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02882 - - gmx:100789301 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02882 3 50333627 50339233 Pumo3g02882 3 50333627 50339233 ECH