Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02875 ATGGTTTGCAACTACGTGTACGTGAATCTCGCCGTCGTTGTCTTCTCGGCAACTTTGATCTCTCGCTGTTTGGCATTTACGGATCCCCCTGACGTCACAGCTCTGCAGGATCTATACAGGGCCTTGAACAACCCAGCAGTGCTGAATGGATGGAACGGTAATGATCCTTGTGAGGAATCTTGGAGAGGAGTAGCATGTTCTGGGTCATCAGTTATACACCTCAAAATTCAAGGATTAAACCTTACCGGGTATCTTGGAGGCTTGCTCAATAATCTACAAAACTTGAAGCAACTTGATGTCAGTTCTAACAACATAGTGGGTGAAATACCACTGGGTTTACCCCCGAATGCCACACATATAAATATGGCTTGCAACTATTTGGGCCAAAATATCCCCCATACATTGTCAACCATGAAAAAACTAAGACATCTGAATTTAAGCCACAATTTCTTGTATGGACCCGTTGGCAATGTCTTTACTGGCTTAGATGATCTCAAAGAAATGGACCTTTCATACAATAATTTCACCGGTGATCTGCCAAGTTCATTTGGTTCCTTGACAAGCCTTGAAAAATTGTTTCTGCAGAATAACAGATTCACCGGATCAGTCACCTACCTGGCTGAGCTTCCACTCATTGATTTGAACATTCAAGACAATCTGTTCAGTGGCATTCTTCCACAGCATTTTCAGTCCATACCAAACTTATGGATTGGAGGGAACCAGTTCCATGCAGTAGACAACTCTCCTCCCTGGGCATTTCCTTTGGACAATGTACCCATTGAGCAAAATACTAGTGGCCCACCCATAACTCAGGCAAATGCCGTCGAGAACTATGGTCCTCCCAATAAAGTAAGGAAACAAAAGAAGAAACGTATGGGTCCCGGAGGTATAGCTTTTATGGTTGGTACAGGAACATTATTGGCGACAGGTTTTGCGCTCTTCATTGCGATCCGTTTGAATAAGCTCCATAGACAGAGAATGGAGAACTATGAAAGCAACCATAGTTCATTGCCTTCTCATCCAATCAGTGCAACCAAAGATGTCTCTACTACGGCTGTAGATGAGAGCCTGCAAATCCCACCTTACAATGCTGCATCCCTTTTGGGTCCAAGGCGATTAACTTCCCATGCCCATAAAAGAACAGGGGAAACATCAAGAAAAAGCTTTTCCGGAAGAGACAGATTCACTGGAAAGACAAAGGTTTATACAGTAGCGGAGGTTCAGTTGGTTACAAACAGTTTCCACGAAGACAACCTTCTGGGAGACGGATCCCTTGGCCCTGTTTACAGAGCTGAATTTCCAGATAACAAGGTTTTAGCAGTGAAGAATATCAACATGGCCGGCATGTCTTTCAGTGAAGAGGAAAAGTTCTTAGATGTCGTTTGCACCGCTTCCCGTCTGAAGCACCCTAACATTGTTTCACTTAAAGGCTACTGTTTGGAGCACGGACAACATCTTCTTGTCTACGACTATGTCAGAAATTTATCCCTAGATGATGCTCTTCATAGTGCAGCATACAAACCTTTATCGTGGGGCACCCGTCTCAGAATTGCTTTAGGTGTTGGTCAGGCCCTTGACTATTTGCACTCGACGTTCTCCCCTCCTGTTGCCCATGGCAACTTAAAGGCTACCAATGTTCTACTGGACGAAAATCTCATGCCTCGTGTTACTGACTGTGGCTTGGCTATTTTGAGACCACTGACAAGCAATAAAGTCAAAATTAAGGCTTCTGAGATTGATATTAGAGATACAGGATACAGTTCACCAGACCATGACCAACCAGGAATTGGCAGCACGAAGAGTGACATCTTTGCCTTCGGAGTGTTGCTTCTTGAGCTGCTAACAGGAAGAAAACCTTTCGATGGTTCCAGGCCAAGAGAAGAGCAATATCTGGCAAAGTGGGCTTCATCAAGGCTTCATGATGGCGACAGTTTGGAACAGATGGTGGATCCAGCAATCAAAAGGACATTTTCGTCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGCATTCAGCGTGTAAAGGAATTTCGACCTCCAATGTCTGAAATCGTGGACTCTCTAGTATCATTTTCTCAAAAGCTCGTTTCAAAGAGTGGTGCAGCAGATGGTACTGAACTTGATCCACTTGAGAGGTCTTTTCGCACAACCACCTCACGCTTTATCGGCTCACCCGCATTGAGCTACGTATCTGCCTGA 2205 0.4458 MVCNYVYVNLAVVVFSATLISRCLAFTDPPDVTALQDLYRALNNPAVLNGWNGNDPCEESWRGVACSGSSVIHLKIQGLNLTGYLGGLLNNLQNLKQLDVSSNNIVGEIPLGLPPNATHINMACNYLGQNIPHTLSTMKKLRHLNLSHNFLYGPVGNVFTGLDDLKEMDLSYNNFTGDLPSSFGSLTSLEKLFLQNNRFTGSVTYLAELPLIDLNIQDNLFSGILPQHFQSIPNLWIGGNQFHAVDNSPPWAFPLDNVPIEQNTSGPPITQANAVENYGPPNKVRKQKKKRMGPGGIAFMVGTGTLLATGFALFIAIRLNKLHRQRMENYESNHSSLPSHPISATKDVSTTAVDESLQIPPYNAASLLGPRRLTSHAHKRTGETSRKSFSGRDRFTGKTKVYTVAEVQLVTNSFHEDNLLGDGSLGPVYRAEFPDNKVLAVKNINMAGMSFSEEEKFLDVVCTASRLKHPNIVSLKGYCLEHGQHLLVYDYVRNLSLDDALHSAAYKPLSWGTRLRIALGVGQALDYLHSTFSPPVAHGNLKATNVLLDENLMPRVTDCGLAILRPLTSNKVKIKASEIDIRDTGYSSPDHDQPGIGSTKSDIFAFGVLLLELLTGRKPFDGSRPREEQYLAKWASSRLHDGDSLEQMVDPAIKRTFSSKALSRYADIISLCIQRVKEFRPPMSEIVDSLVSFSQKLVSKSGAADGTELDPLERSFRTTTSRFIGSPALSYVSA 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02875 734 FunFam Leucine-rich repeat receptor-like protein kinase 492 701 - -
Pumo3g02875 734 SUPERFAMILY L domain-like 27 237 - -
Pumo3g02875 734 Pfam Protein tyrosine and serine/threonine kinase 417 690 IPR001245 GO:0004672|GO:0006468
Pumo3g02875 734 ProSiteProfiles Protein kinase domain profile. 414 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02875 734 SUPERFAMILY Protein kinase-like (PK-like) 390 690 IPR011009 -
Pumo3g02875 734 Gene3D Transferase(Phosphotransferase) domain 1 492 707 - -
Pumo3g02875 734 Gene3D Phosphorylase Kinase; domain 1 374 491 - -
Pumo3g02875 734 Pfam Leucine Rich Repeat 140 151 IPR001611 GO:0005515
Pumo3g02875 734 Pfam Leucine rich repeat 158 199 IPR001611 GO:0005515
Pumo3g02875 734 Gene3D Ribonuclease Inhibitor 28 258 IPR032675 -
Pumo3g02875 734 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 694 IPR046959 -
Pumo3g02875 734 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Pumo3g02875 734 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 379 491 - -
Pumo3g02875 734 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02875 Pumo-Chr3 50114865 50120522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02875 10 734 Strubbelig Receptor Gene Family AT5G06820 55.144 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Pumo3g02875 PK_Tyr_Ser-Thr 5.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02875 - - gmx:100793182 1253.81