Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02871 ATGGGGTTCTCAATAGCTATTGAATTAGAAGAAGCACAACAACAACAAGAGCAAGAGACAACAAAGTTTTTAGGTTCCTCTCTGAATAATAATATCATGGCTTCTTCAAGTATTAAGATCAATACCAACTCAACAACTCAACTTGAACCACTCCCCCCACCCCCACATCTTCATCATCAACCACCGCAACATCATTTTCATCATCATCAAATACCAGACCAACAACAAATCTCTTTTGGGATGATGCCATCTTCCTCATCATCACCCTCTATCCCCGGAAATTACTTAAGCAAAGATTCTGGAGCTTATGATTTGGGGGAATTGGATCAAGCCTTTTTTTTGTATCTTGATGGTCAGGCTGACCCTTCTAGTGTTCAAGACCAAAAACAGAACTCATCTTCGGGAATGAGGCCACCACCAACTCTCAACATTTTCCCATCTCAGCCTATGCACGCAGTGCCACCATCCAATTCCAAGGTTAGCATGGAATTACCCTCCACACAACCCAGTGATTCCAAGAAACCACCAGAGTCATCCATGGCCAAGCCCAACCCACACACTGAATCCCCCTCTGCACCTGAGCCACCCAAAGCTGTGAAGCGAGAGGGCAATCGCAAGGGAACAACGTCAAGTTCTGAGCAGGAAGCACCCAAAACACCAGATCCTAAGACACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCAAGGAAAAGCAGGCTCAGGAAAAAGGCGTACGTTCAACAACTAGAGTCAAGTAGGATTAAGCTTAATCAGCTAGAACAAGAGTTACAGCGTGCAAGAGCTCAAGGCATGTTAATGGGTGGAAGTGCAATTCTGGGAGGGGAGCAAGGCTTTCCTATGGCTATGAGTGGCATTAGCTCAGAGGCTGCAATGTTTGACGTGGAATATGCGAGATGGTTAGAGGAGCACCACCGCATAGTGTGCGAGCTAAGAGCTGCACTCCAAGAACACCTTCATGAAAACGAGCTTCGGTTATACGTGGACAATTGCTTGGCTCATTATGACCAAGTAATGAACCTCAAGAGCATAGTGGCCAAAACAGATGTGTTCCACCTTGTTTTTGGCATGTGGAAAACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGACTTCAGACCATCTGAACTCATCAAGATTATTTTGGGTCAAATTGAGCCTCTTACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCTACACAAGAGGCAGAAGAGGCTCTTTCCCAAGGGCTTGATGCTCTCAACCAATCTCTCTCAGAGACTATAACTTCAGACTCTATGTGGTGCCCTCCAAATATGACTAACTACATGGGACAGATGGCTGTGGCAATGAACAAACTCTCCACTCTAGAAAGCTTTGTGAGACAGGCTGATAATCTGAGGCACCAGACAATTCACCGTCTCCACCAGCTTCTAACAACGCGTCAAGCCGCGAGGTGTTTGGTGGCCATTTCTGAGTACTTCCATCGCCTTCGAGCCCTCAGTTCTCTGTGGCTGACACGCCCTCGCCAAGATCAGCAGTGA 1551 0.4642 MGFSIAIELEEAQQQQEQETTKFLGSSLNNNIMASSSIKINTNSTTQLEPLPPPPHLHHQPPQHHFHHHQIPDQQQISFGMMPSSSSSPSIPGNYLSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQKQNSSSGMRPPPTLNIFPSQPMHAVPPSNSKVSMELPSTQPSDSKKPPESSMAKPNPHTESPSAPEPPKAVKREGNRKGTTSSSEQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARAQGMLMGGSAILGGEQGFPMAMSGISSEAAMFDVEYARWLEEHHRIVCELRAALQEHLHENELRLYVDNCLAHYDQVMNLKSIVAKTDVFHLVFGMWKTPAERCFMWIGDFRPSELIKIILGQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSETITSDSMWCPPNMTNYMGQMAVAMNKLSTLESFVRQADNLRHQTIHRLHQLLTTRQAARCLVAISEYFHRLRALSSLWLTRPRQDQQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02871 516 MobiDBLite consensus disorder prediction 150 186 - -
Pumo3g02871 516 SUPERFAMILY Leucine zipper domain 223 265 IPR046347 GO:0003700|GO:0006355
Pumo3g02871 516 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 226 241 IPR004827 GO:0003700|GO:0006355
Pumo3g02871 516 Coils Coil 242 269 - -
Pumo3g02871 516 MobiDBLite consensus disorder prediction 121 226 - -
Pumo3g02871 516 SMART brlzneu 219 272 IPR004827 GO:0003700|GO:0006355
Pumo3g02871 516 FunFam BZIP family transcription factor 222 271 - -
Pumo3g02871 516 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 221 265 IPR004827 GO:0003700|GO:0006355
Pumo3g02871 516 CDD bZIP_HBP1b-like 223 275 - -
Pumo3g02871 516 ProSiteProfiles DOG1 domain profile. 296 510 IPR025422 GO:0006351|GO:0043565
Pumo3g02871 516 MobiDBLite consensus disorder prediction 121 141 - -
Pumo3g02871 516 PANTHER TRANSCRIPTION FACTOR TGA9 142 513 - -
Pumo3g02871 516 Pfam Seed dormancy control 314 387 IPR025422 GO:0006351|GO:0043565
Pumo3g02871 516 Pfam Basic region leucine zipper 220 265 IPR004827 GO:0003700|GO:0006355
Pumo3g02871 516 Gene3D - 222 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02871 Pumo-Chr3 50027490 50035733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02871 93 514 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 63.039 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo3g02871 DOG1 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02871 K14431 - gmx:100800059 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02633 5 72363100 72369158 Pumo3g02871 3 50027490 50035733 PCT