Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02861 ATGGATTCCCATACCCATCATCATCAGAGTTACCAACTTCAACAACACCAACACCAACAGAACCAACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCTCCAAGCTCGCTTCTTTCAAATCTCACACCTTTTGTGAGTGAAGAAGACGCTGTTGCTGTTGGTTCTAGTAGCTTCCAAGACTTGGAAGGAAACAACAACAACAACAACAAGGGTTGTTCTAAGGATTTGAGTTCGATGAATTCGCATAAGGGGTTGTATGGTGGGGGGTTGCCACCTCACTATCCGAGGCATGGTTCTTCTGCTGCTACTTCAAGCTCTGCTATGGAAGGGTCTTATGGGTTGGTGGGTTCAATGGGGATGGATCATGAAGCGCCCCATAAGGGGTTTGGGTCAAGTCTTTTCAGGCAGAGTAGCTCCCCTGCTGGCCTTTTCTCCAACAACAACATTTCTTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGACAGTAATGGTGAACTTAGTCCATGCATTAACAGATTGAAGAATCAGGTTAGCTTCTCACCAAGAAATGCTTCTTCCTTGGGAATGTTGTCGCATATCTCCGAAATAGGGAGTGAAGACATTGAGGCAACTAGTCCTGATGATGATAGAAGGCATGGAGGTGATGATACTCAACATTATGGCCCTGGATTCCCCTATGGTTCTTGGAATGAGACTCCACAACTCTCGGAAAATCTCAGTGGCTTGAAAAGAGGTAGAAGTGGCAATGAAAAGATGTTTTCTGATGTTCAGAATGGAGAGCTAGGACACCAAGTTAATATGTTATCACATCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACCATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAGATCAGAGCAAAACGAGGCTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTGCAAGAGCTTGTACCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTAAGTGAAAAAAGGGCAAACTGCAAGTGTATAAGCATGCAGAGGGCAGATACAAATCAAATTGCTTGA 1173 0.4382 MDSHTHHHQSYQLQQHQHQQNQPSSGLLRFRSAPSSLLSNLTPFVSEEDAVAVGSSSFQDLEGNNNNNNKGCSKDLSSMNSHKGLYGGGLPPHYPRHGSSAATSSSAMEGSYGLVGSMGMDHEAPHKGFGSSLFRQSSSPAGLFSNNNISFQNGFATMKGVGNYGGVNDSNGELSPCINRLKNQVSFSPRNASSLGMLSHISEIGSEDIEATSPDDDRRHGGDDTQHYGPGFPYGSWNETPQLSENLSGLKRGRSGNEKMFSDVQNGELGHQVNMLSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCISMQRADTNQIA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02861 390 MobiDBLite consensus disorder prediction 57 105 - -
Pumo3g02861 390 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 315 377 IPR036638 GO:0046983
Pumo3g02861 390 MobiDBLite consensus disorder prediction 57 80 - -
Pumo3g02861 390 Pfam Helix-loop-helix DNA-binding domain 317 363 IPR011598 GO:0046983
Pumo3g02861 390 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 362 IPR011598 GO:0046983
Pumo3g02861 390 MobiDBLite consensus disorder prediction 10 28 - -
Pumo3g02861 390 Gene3D - 313 384 IPR036638 GO:0046983
Pumo3g02861 390 SMART finulus 318 368 IPR011598 GO:0046983
Pumo3g02861 390 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 383 - -
Pumo3g02861 390 MobiDBLite consensus disorder prediction 1 28 - -
Pumo3g02861 390 MobiDBLite consensus disorder prediction 211 225 - -
Pumo3g02861 390 FunFam Transcription factor bHLH130 family 313 382 - -
Pumo3g02861 390 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02861 Pumo-Chr3 49816420 49820709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02861 16 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.889 6.89e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02861 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02861 - - gmx:100819605 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02861 3 49816420 49820709 Pumo3g02861 3 49816420 49820709 ECH
Pumo3g02861 3 49816420 49820709 Pumo3g00033 3 531316 534282 ECH
Pumo5g02623 5 72245587 72249297 Pumo3g02861 3 49816420 49820709 PCT