Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02860 ATGCCACGTCATCATCATCATCATCATCTCCACCTCCATCTTTCTGTGTTCTTCTTCATTCTTCTCCCCCTCACACTCTCCCTGAACTCCGACGGGCTCTCCCTGCTCGCCTTCAAGGCCGCGATATCCGCGGACCCCACGGGAGCCCTAGCCTCCTGGAAAGACACCTCCCCGACCCCCTGCAACTGGACAGGAGTCACATGCAAGCACAACCGCGTGACCCAAATAAGCCTCACTTCAAAGGCCCTAACGGGCTACCTCCCTTCCGAGCTGGGCTTCTTGGCCCACTTAAAGCGCCTCGTCCTTCCCCATAACAACCTCTCCCACGCAATCCCCACCGCCCTCTTCAACAACGCCACCAGCCTCCTCGTCTTAGACCTCTCCCACAACGCCCTCGCGGGTCCACTCCCTGCGACTCTCTCCTCTCTCAAGCGCCTCGTCCACCTCGACCTCTCCTCGAACCTCCTCTCCGGTCCCCTCCCGGTCACCCTCTCCTCCCTCCCCTCCCTCGGGGGAACGCTCAACCTCTCCCACAACCAGTTCACCGGCAAAATCCCGTCCTCCCTGGGTTCACTCCCGGTCACCGTCAGCCTCGACCTCCGCTACAACAACTTAACCGGACAAATCCCTCAGCTCGGATCATTACTCAATCAAGGCCCCACCGCTTTCTCCAACAATCCTTTCCTCTGCGGCTTCCCCTTGCAAAACACGTGCCCCGAGAATCCGAAAATCCCAACCATAAAACAAAACCCGAACCCGAACCCGAGCCTCCAGACCGGGGAACAGAACCGTGGCGGGCTTTTTGTGTGTGTGGTTGCGATGGTGGTGATATCCGGAGTGGTTCTATGTTTTGCGGTGGTTTTTCTGCTTCTGCGGCGAGGGAGGGGTGAGGAGGGGCAATTTGGGAAAGTGGAGGTGGGTGGAAATGAGGTGTATGGGGACGATGATGTGAAGGGGAGGTTTGTGGTGGTGGAGGAGGAGGGAGGGGTGATGGGAGGGATGGAGTTGGAGGATTTGTTGAGAGGTTCAGCTTACGTGGTGGGGAAGAGTAGGAGTGGGATTGTGTACAAGGTTGTCGGGGTTGGGAAAGCTGGTGGTGCGGCGGCGGCGGCGGCGACGGTGGTGGCGGTGAGGAGGCTCGGCGAGGGGAGTGCCACGTGGCGGTTGAAGGAGTTCGAGGCGGAGGTGGAGGGTGTGGCCAGGGTGAGGCACCCCAATGTGGTGGCTCTCAGAGCTTATTACTATGCCAGGGAGGAGAGGCTTCTCGTCACGGATTTCGTCCGCAACGGGAACTTGCACACCGCATTGCATGGTGGGCCTGCCAATTCATTTTCACCATTAACATGGGCAGCAAGGTTAAAAATTGCTCAAGGAGCAGCAAGAGGCTTAACCCACATACACGAGTTCAGTGGTAGAAAATATGTCCATGGAAACCTCAAATCAACAAAAATCCTTCTAGATGAGGATCTGCATCCTTACATATCCGGTTTTGGACTTACCCGTCTGAGTATAGGTACCTCAAACTCAAAGTCTCCCACATTATTAGCACCAAAACGGCTTAGTTCAAACCATTCTATGGCAGCATCAGCAATTGGTTCAAATGTTTCAGCTTCCTCTAACATCTACTTGGCACCTGAGGTGAGCATAGCTGGTGGAAAGTTCAATCAGAAATGTGATGTGTATTCTTTTGGTATAGTGCTGTTAGAACTTTTGACAGGTAGGCTTCCAGATTTAGGAGGTGAAAATGATGGCATCATGGACCTAGAGAGTTTTGTGAGGAAAGCATTCAGGGAGGAGCAACCCTTGTCAGAGATTATAGACCCTGCACTTCTGCCTGAGGTTTATGCTAAAAAGCAAGTTATTGCAGTGTTCCATGTTGCACTCAACTGCACAGAACTTGATCCAGAATTGCGACCAAGAATGAGAATCGTGTCTGAGACCCTTGATCGAATCAAAATACAGTGA 1965 0.5374 MPRHHHHHHLHLHLSVFFFILLPLTLSLNSDGLSLLAFKAAISADPTGALASWKDTSPTPCNWTGVTCKHNRVTQISLTSKALTGYLPSELGFLAHLKRLVLPHNNLSHAIPTALFNNATSLLVLDLSHNALAGPLPATLSSLKRLVHLDLSSNLLSGPLPVTLSSLPSLGGTLNLSHNQFTGKIPSSLGSLPVTVSLDLRYNNLTGQIPQLGSLLNQGPTAFSNNPFLCGFPLQNTCPENPKIPTIKQNPNPNPSLQTGEQNRGGLFVCVVAMVVISGVVLCFAVVFLLLRRGRGEEGQFGKVEVGGNEVYGDDDVKGRFVVVEEEGGVMGGMELEDLLRGSAYVVGKSRSGIVYKVVGVGKAGGAAAAAATVVAVRRLGEGSATWRLKEFEAEVEGVARVRHPNVVALRAYYYAREERLLVTDFVRNGNLHTALHGGPANSFSPLTWAARLKIAQGAARGLTHIHEFSGRKYVHGNLKSTKILLDEDLHPYISGFGLTRLSIGTSNSKSPTLLAPKRLSSNHSMAASAIGSNVSASSNIYLAPEVSIAGGKFNQKCDVYSFGIVLLELLTGRLPDLGGENDGIMDLESFVRKAFREEQPLSEIIDPALLPEVYAKKQVIAVFHVALNCTELDPELRPRMRIVSETLDRIKIQ 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02860 654 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 652 IPR046959 -
Pumo3g02860 654 SUPERFAMILY Protein kinase-like (PK-like) 346 648 IPR011009 -
Pumo3g02860 654 Gene3D Ribonuclease Inhibitor 28 172 IPR032675 -
Pumo3g02860 654 Gene3D Phosphorylase Kinase; domain 1 342 426 - -
Pumo3g02860 654 Pfam Protein tyrosine and serine/threonine kinase 353 647 IPR001245 GO:0004672|GO:0006468
Pumo3g02860 654 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Pumo3g02860 654 Gene3D Transferase(Phosphotransferase) domain 1 427 654 - -
Pumo3g02860 654 Pfam Leucine rich repeat 96 156 IPR001611 GO:0005515
Pumo3g02860 654 FunFam Leucine-rich repeat receptor-like protein kinase 28 173 - -
Pumo3g02860 654 Gene3D Ribonuclease Inhibitor 173 238 IPR032675 -
Pumo3g02860 654 SUPERFAMILY L domain-like 30 235 - -
Pumo3g02860 654 ProSiteProfiles Protein kinase domain profile. 341 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02860 Pumo-Chr3 49743257 49747960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02860 28 652 Receptor kinase-like Gene Family AT3G57830 53.416 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo3g02860 PK_Tyr_Ser-Thr 1.3e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02860 - - gmx:100806058 1006.13