Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02857 ATGGAGCAAACCACGCTCGAAGCCATTCAGTTGAACGAAGAAATCCAAGGCCTCATGGCTCCAGCGCCGGAAACCGCCAATTCCTTCACGGCGCTGCTCGAGCTTCCTCCGACGCAGGCCGTCGAGCTCCTCCACTCGCCGGAGCGCGCCGGAAAACCGCCGCGCCACAGTCCGAAACCCTATCCGTTGACCTCGTTCGCCTCCGCCTCCACCGCCGCCGCGAACCTGACCTTCCCTTCCAACGCCGCGCTGATCGAACGCGCCGCCAGGTTCTCCGTCTTTGCCGGCGAGAACTCCAACTCGAGCTCGCCGGAGGTGAAGCGCGAGCTGCCGGAGACCGATTCCAACCCGAGCTCCACTCACGGCGGCGGCTCCGTCTCCGATCCCGCCGTGGAGAACAAGAATCCAAAAACTGCGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGCGTCGTCGAAGAAGAGCAAGGGCGTCGCCGTCGCCGACGAGAGTTCCGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGAACGGCATTGGTTCTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTTAACCCAGTAATTGATTTCAACCTCGACAGCTTACTGGCTACCGAAGAAGTGTCTCCAATGGACTGTAACTACCCTCCCACAGTTGCACCTGTCATGTGGCCAGAAATCCCACAGAATGGAAACAGACGACAATATCAGCAACCGTGGCAGTTCGATGCATTCCACCAACCCCTTTGGGGGAGGGAAGAAGACAACACTAATTTCATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCAAATTCAGTTGAAGATGGAGCTCTGAAGGGCAACTACAAAGGTGGTGCAACCAGTAGCAATTAG 1047 0.5482 MEQTTLEAIQLNEEIQGLMAPAPETANSFTALLELPPTQAVELLHSPERAGKPPRHSPKPYPLTSFASASTAAANLTFPSNAALIERAARFSVFAGENSNSSSPEVKRELPETDSNPSSTHGGGSVSDPAVENKNPKTAKRKEREKKVKASSKKSKGVAVADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLATEEVSPMDCNYPPTVAPVMWPEIPQNGNRRQYQQPWQFDAFHQPLWGREEDNTNFMTPENSLLSYDSSANSVEDGALKGNYKGGATSSN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02857 348 SMART finulus 188 238 IPR011598 GO:0046983
Pumo3g02857 348 FunFam transcription factor bHLH48-like isoform X1 179 251 - -
Pumo3g02857 348 MobiDBLite consensus disorder prediction 96 167 - -
Pumo3g02857 348 CDD bHLH_AtBPE_like 172 257 - -
Pumo3g02857 348 Pfam Helix-loop-helix DNA-binding domain 186 233 IPR011598 GO:0046983
Pumo3g02857 348 Gene3D - 179 250 IPR036638 GO:0046983
Pumo3g02857 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 251 IPR036638 GO:0046983
Pumo3g02857 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 232 IPR011598 GO:0046983
Pumo3g02857 348 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 79 326 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02857 Pumo-Chr3 49636655 49642083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02857 2 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.136 4.99e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02857 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02857 - - gmx:100799133 552.747