Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02848 ATGGATTCAAGAAATGTGCCAAACTTGAACGGCGTCACTAAGAAGACCAAAGGTCGACAAAAGATCGAGATGAAGAAGATAAGCAACGAGTGTAACCTTCAGGTGACGTTCTCGAAGCGTCGCACTGGGGTTTTTAAGAAAGCGAGTGAGCTTGCAACCCTCTGTGGTGTGGACCTCGCAGTGATTATGTTCTCACCCAGTAATCGAGTTTTCTCCTTCGGCAGCCCCAATGTGGATTCTGTTATTCAACGCTATACGACACAGGGCCCACTTCCCCTCCTCACCTTAGACCTCAATGAGGCCCCTTGCACCGTGGACGAGGGTGAGCTCCACGCGCACCTCAGCAGTTTGTCCAATGAAATCGACGCAAAGAAAAAACGCGTAAAGGATCTAAACCATTTGTTAAAGGCCGCAGAGGATATCATCTGGTGGGATGCACCAATTGAAAGCATGAACAATGGCCAACTTCGAGAAGTACCAGAAGATGTTGAAGGAGTTAAAGACACATGTCAGTGA 516 0.4806 MDSRNVPNLNGVTKKTKGRQKIEMKKISNECNLQVTFSKRRTGVFKKASELATLCGVDLAVIMFSPSNRVFSFGSPNVDSVIQRYTTQGPLPLLTLDLNEAPCTVDEGELHAHLSSLSNEIDAKKKRVKDLNHLLKAAEDIIWWDAPIESMNNGQLREVPEDVEGVKDTCQ 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02848 171 SUPERFAMILY SRF-like 18 94 IPR036879 GO:0003677|GO:0046983
Pumo3g02848 171 MobiDBLite consensus disorder prediction 1 15 - -
Pumo3g02848 171 MobiDBLite consensus disorder prediction 1 20 - -
Pumo3g02848 171 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pumo3g02848 171 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pumo3g02848 171 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pumo3g02848 171 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pumo3g02848 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pumo3g02848 171 Coils Coil 114 141 - -
Pumo3g02848 171 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pumo3g02848 171 Gene3D - 29 91 IPR036879 GO:0003677|GO:0046983
Pumo3g02848 171 PANTHER MADS BOX PROTEIN 19 156 - -
Pumo3g02848 171 CDD MADS_MEF2_like 18 85 IPR033896 GO:0000977|GO:0045944
Pumo3g02848 171 FunFam Agamous-like MADS-box protein AGL62 29 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02848 Pumo-Chr3 49457856 49458371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02848 12 167 Type I MADS-box Gene Family AT5G60440 44.375 1.20e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo3g02848 SRF-TF 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02848 - - gmx:100808929 242.276