Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02843 ATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATTCAGCAAATTGGAAGAGGAGCACTTGGTGCAACTTTTCTCGTTCTACACAAGGTTGAGAACAAGAGGTATGTGCTGAAGAAAATTCGCTTTGGCAAGCAAGAAGACAAGTCCAAAGTGACAGCACAACAAGAGATGGACCTGATAGCAAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCCTGGGTGGAGAAGGATGACTACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGTGAATATAAAGAGAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTTTGCAAATGGTTGACTCAGTTGTTACTAGCTGTGGACTACCTTCACTCCAATCGGGTGCTCCACAGAGATCTTAAGTGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGTCTTGCAAAGCTTCTTAATACTGAAGACCTTACTTCCCCGGCTGTTGGAACTCTCAACTACATGTGCCCTGAGGCCTTTGCTGGTATGCCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACTGGCATTTCGTGCTCCAGACAGGGCGGGACTTATCAATAAAATAAATAGATCCTCCATTTCTCCAATGCCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTACAACCTTATGTTCTACGCTGTCGTAATGCATCATCTATTTTTCTACCAGTACATCTTATAAGTAGTAACTCAAAGGATAAAACAAAAAACAAATCTACTGGTAGCAAAGACCATTGGGACAAGGAGGCAGGATTGGCGGGATTAGTAAATCGTTTGGAGCGAATTTATCCATTAGAGGGAAATGGAGATGTACAGACAAGGAACCGGCATAATGATGGCAAGCTAGCAGTGTCAACCAGCGCAGAAGACAACCTTGAGACCAAAATGGTTGATTCTACCAGCTACACTATGGAATTTTCTACTAGTATTAGTGGCTCAAAAGATGGCTCAACGACATCTGAATCAACTGTTTGCAGTGCGTGCAAGGAAGGAGACTTTAAAAATAGACTTGCAAGGGACATGGCTGACAGTGAGATCACTTCAAAGAGTACAATAGATTCTGTGCATGAAGAACAAGGACTTGATGCTCATACGTCATATGCAAATGACATAAATGCAGCGATTAAAAAAGTTGAAGATACTTTTTCCAATGAAGATTTCAATACAGATGAGGCACTGAGTGAAGGTGCCAAACCTGAGGACTCCAGTAAATCAATAATGTCCAGTGAAGACAGCAACAGTAATGATAAAGATGAGTCCATTGATGAGATCATGTCAAAGAGTACCTTAGATTCTGTGCATGAAGAACAAGGATATACTGCTGATCATTTTCAGAAGCCAGATGTGATTGACACAAGTGCAGTGTCTACAAAAGTTGAAGATAACTTTTCCAATGAAGGTTTTGATAAAACAGAAGCAGAGAGGGAAGATGCCAAACCTGAGGACTCCAGAAAATCAATAGTGTCCAGTGAAAACAGCGACGGTAATGACAACGATGGGTCCATTGATGAGATCACTTCAAAGAGTACGCTAGATTCTGTGCATGATGAGAAAGGATTTACAGCTGAACATTTTCTGAAGTCAGATGTGATTGACACAAATGCAGTGGCTACAAAAGTTGAAGATAATTTTTCCAATGGTTTTGATCAAACTGAAACAGAGAGAGAAGATGCCAAACCTGATGACTACAGAAAATCAATAGTGTCCAGTGAAAACAGCGACAGTAATGATGGGTCAATTAATGAGATCACGTTAAAGAGTACGCTTGATTCTGTGCATGAAGAGCAAGGGTTTATAACTGAACATGTTCAAAAGTCAGATGTTGTTGACATAAATGCAGTGGCTTCACAAGTTGAAGACAAATTTTCTAATGAGGGCTTTGATAAAGCTGAAGCTCAGAGGGAAGATGCCAAACCTGAGAGCTCTAGTAAATCAATAATTTCCTGTGAAAACAACAATGGTAATGATGAAGATGGATCTGGTTATGAGATCACATCAAAGAGTATGCTAGATTCTGTAGGTGAAGAGCAAGGTCTTGCCAATGAACATTTTCAGAAGTCTGATGCAAATGCAATTGACATAAATGCAGTGACTACAGGAGTTGAAGATAAACTTTCCAATGAAGATTTGGATAAAGCTGAAACACAGGAGAAAGATGCTAAACCTGAGGACTCCAGTAAATCATTGTCCAGTGAAGACAGCAACAGTAATGATAAAGATGGGTCCATTGATGAGGAAAGGTCATCACCAATGGCACAACCTGTTAAGGTTGAACATGACACTGAAATTGGAAGCTGCTTGAAGGAAAATGAAAACCCTGAAGCATTTACAGAAGGCTCACACATGGACAGCTCGACTTCTGAGAGTAACAATGCACGTCCAGGTAAGGATGAAGGCAGAGAAGATACACACACAATCAGTTGTTCAACGTGTAAAGAAGATGACAATGCTGTCGTGGCCGATAAGCCACCAAATGGCATTTCATTAAGGACACGTATATCAAGGGGCGGTGATACTACCTGCCAGCAAAGAGCCGATGCTCTGGAATCTCTGCTTGAGTTATGCGCGCAGCTACTTCAGCAAAGAAAGCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTATCTGTATCATCCAGAGAAACAGCAATATGGCTTACAAAAAGCCTCGTGGCCTCACAAAAACTTAATCCTGAGACATAG 2886 0.4082 MESSGKMEDYEVIQQIGRGALGATFLVLHKVENKRYVLKKIRFGKQEDKSKVTAQQEMDLIAKLNYPYIVEYKDAWVEKDDYICIITGYCEGGDMAVNIKRARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGEFGLAKLLNTEDLTSPAVGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQLAFRAPDRAGLINKINRSSISPMPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPYVLRCRNASSIFLPVHLISSNSKDKTKNKSTGSKDHWDKEAGLAGLVNRLERIYPLEGNGDVQTRNRHNDGKLAVSTSAEDNLETKMVDSTSYTMEFSTSISGSKDGSTTSESTVCSACKEGDFKNRLARDMADSEITSKSTIDSVHEEQGLDAHTSYANDINAAIKKVEDTFSNEDFNTDEALSEGAKPEDSSKSIMSSEDSNSNDKDESIDEIMSKSTLDSVHEEQGYTADHFQKPDVIDTSAVSTKVEDNFSNEGFDKTEAEREDAKPEDSRKSIVSSENSDGNDNDGSIDEITSKSTLDSVHDEKGFTAEHFLKSDVIDTNAVATKVEDNFSNGFDQTETEREDAKPDDYRKSIVSSENSDSNDGSINEITLKSTLDSVHEEQGFITEHVQKSDVVDINAVASQVEDKFSNEGFDKAEAQREDAKPESSSKSIISCENNNGNDEDGSGYEITSKSMLDSVGEEQGLANEHFQKSDANAIDINAVTTGVEDKLSNEDLDKAETQEKDAKPEDSSKSLSSEDSNSNDKDGSIDEERSSPMAQPVKVEHDTEIGSCLKENENPEAFTEGSHMDSSTSESNNARPGKDEGREDTHTISCSTCKEDDNAVVADKPPNGISLRTRISRGGDTTCQQRADALESLLELCAQLLQQRKLEELAAVLRPFGEDAVSVSSRETAIWLTKSLVASQKLNPET 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02843 961 MobiDBLite consensus disorder prediction 605 625 - -
Pumo3g02843 961 CDD STKc_Nek 9 264 - -
Pumo3g02843 961 MobiDBLite consensus disorder prediction 325 346 - -
Pumo3g02843 961 MobiDBLite consensus disorder prediction 597 638 - -
Pumo3g02843 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Pumo3g02843 961 FunFam serine/threonine-protein kinase Nek6 isoform X2 90 278 - -
Pumo3g02843 961 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Pumo3g02843 961 MobiDBLite consensus disorder prediction 446 571 - -
Pumo3g02843 961 MobiDBLite consensus disorder prediction 546 565 - -
Pumo3g02843 961 Gene3D Transferase(Phosphotransferase) domain 1 92 308 - -
Pumo3g02843 961 Pfam Protein kinase domain 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02843 961 MobiDBLite consensus disorder prediction 468 499 - -
Pumo3g02843 961 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02843 961 MobiDBLite consensus disorder prediction 679 698 - -
Pumo3g02843 961 MobiDBLite consensus disorder prediction 520 545 - -
Pumo3g02843 961 SUPERFAMILY Protein kinase-like (PK-like) 7 285 IPR011009 -
Pumo3g02843 961 MobiDBLite consensus disorder prediction 699 729 - -
Pumo3g02843 961 ProSiteProfiles Protein kinase domain profile. 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02843 961 MobiDBLite consensus disorder prediction 761 803 - -
Pumo3g02843 961 MobiDBLite consensus disorder prediction 850 865 - -
Pumo3g02843 961 MobiDBLite consensus disorder prediction 676 865 - -
Pumo3g02843 961 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 909 - -
Pumo3g02843 961 MobiDBLite consensus disorder prediction 834 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02843 Pumo-Chr3 49369686 49378284 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02843 7 265 AGC Kinase Gene Family AT1G45160 29.054 7.89e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pumo3g02843 Pkinase 2.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02843 K08857 - gmx:100818558 1275.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02843 3 49369686 49378284 Pumo3g02843 3 49369686 49378284 ECH
Pumo5g02614 5 71605532 71608496 Pumo3g02843 3 49369686 49378284 PCT