Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02835 ATGGCAGACCCTTACTCCAATTTCTTCTCACCAGGTTTCTTCCACTACCCTTCTCCAAACCCTTCACCCCACCAACACCATCATCCCTATGCTCATAACTTCATCAACCAAACTGGTTCAAATATCAACCACAGCAGCACCTTTTCCCACTTCCACCACCACTTTCAAACCACTAATATCTCTTCTTCTTCACCCCCTTCCCCTCCCTTGAGAGAAGCCCTTCCTCTCCTCACTCTCAGCCCCAAAAATGAAGAGGAACAAGAAGAGGATGATCAAGATCAGGACCAGTTTTGCACTAGTGCCATGGATGTGGAAGAGGACTGCAACAACCACAACAGAACCCTCCACCTTCACCCCAAAGAGGAGGAGCAAGAACCTGATGAGGATGTTGGTGATGGCAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATAGCTTCTGTGCTTTCTTCAGCTTGTTCCACAGACAAAGAACAACAGGAACAAGATGGTAATAATAATAATAATAATAATGGGAGTGAGGATTCTTCTTCAGGGTTCTTGTCCAACAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGCTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAGGATTTCAGAACCCTCCAAACACACTACAAGAGGAAGCATGGCATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCCTTTGCTGTGAGGGGTGATTGGAGAACACATGAAAAGAACTGTGGCAAGCTTTGGTATTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTTAAGGATCACATCAAAGCCTTTGGAAGTGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAGGAAGAGCCTGCATCTGAAGTAGAACAAGATAATGACTGA 1110 0.4685 MADPYSNFFSPGFFHYPSPNPSPHQHHHPYAHNFINQTGSNINHSSTFSHFHHHFQTTNISSSSPPSPPLREALPLLTLSPKNEEEQEEDDQDQDQFCTSAMDVEEDCNNHNRTLHLHPKEEEQEPDEDVGDGSVTVALHIGLPSPSAAEIASVLSSACSTDKEQQEQDGNNNNNNNGSEDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDND 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02835 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 238 IPR013087 -
Pumo3g02835 369 SUPERFAMILY beta-beta-alpha zinc fingers 277 315 IPR036236 -
Pumo3g02835 369 SMART c2h2final6 211 233 IPR013087 -
Pumo3g02835 369 SMART c2h2final6 295 315 IPR013087 -
Pumo3g02835 369 MobiDBLite consensus disorder prediction 157 186 - -
Pumo3g02835 369 Gene3D Classic Zinc Finger 273 348 - -
Pumo3g02835 369 PANTHER ZINC FINGER PROTEIN WIP2 40 367 IPR043584 GO:0003700|GO:0010468
Pumo3g02835 369 Gene3D Classic Zinc Finger 210 233 - -
Pumo3g02835 369 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Pumo3g02835 369 FunFam Zinc finger protein WIP2 264 346 - -
Pumo3g02835 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 315 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02835 Pumo-Chr3 49147449 49149997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02835 1 369 C2H2 Transcription Factor Family AT3G57670 59.391 1.08e-142 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02835 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02835 - - gmx:100783088 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02835 3 49147449 49149997 Pumo3g02835 3 49147449 49149997 ECH
Pumo3g02835 3 49147449 49149997 Pumo4g04036 4 81052716 81055032 ECH
Pumo5g02610 5 71559922 71562835 Pumo3g02835 3 49147449 49149997 PCT