Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02828 ATGGAAGGTTGCAAAAAGTCCCCACTAAAGCCTTGGAAGAAAGGGCCAACAAGGGGCAAAGGTGGCCCCCAAAATGCCTCATGTGAGTATAGGGGTGTTAGGCAAAGAACATGGGGCAAATGGGTGGCTGAGATAAGAGAGCCAAAGAAGAGAACAAGGCTGTGGCTTGGCTCTTTTGCCACAGCAGAAGAGGCTGCCTTGGCCTATGATGAGGCTGCAAGGAGACTCTATGGTAATGATGCCTACCTTAACCTCCCCCACATGATGCAACCAACAAGCTTCATCAGTTCCAATTCCAAAGCTCAAAAGTTCAAGTGGTTCCCTTCCAAGAACTTCATCTCAATGTTTCCCTCGCCGCACGGATTGCTCAACCTCAATGCTCAGCCTAGTGTCCAAGTGATCCACCAGAGGCTGCAGCAGCTCAAGCAAAATGGTGTGGTTGCAACAAGTCATTCACCACAACCACAACCACAACCGCATTCTAGTTCATCCACTAATCCAAAGGTGGTAGAACTTGAAGACTTCAACATCCAAAACCATGCAGAAACTCTTCCTCCAATGCAAGAGGGTAATTGTAATTCTCAAGTTTCATCACAAAAAACAATTATTGGTGGTGGTTTTGAGGAGAAGCCCCAGATAGACCTACTTGAGTTTCTTCAGCAGATGGGAATACTAAAGGAAGGAATAGAGGAAGAGAAAACTGATATTAGCTCAGGAAGTTCAACAGTGTCTGAAGCTGCATCAAGAGATGAGAATGAACAACCAGGAGTGTTTTCTGACTTGAGTAGTAGTGTTAACTGGGAGGAATTGATTGAGCTGCATGAGCATGACCATGGAGTTGCAGATAATTTTTATCATGCATCAGAAGAAATCCAGTTTGAAGCATATGACATAAACGAGGACCTTACTTTCTCCACTTCCATTTGGAACTATTGA 936 0.4476 MEGCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAALAYDEAARRLYGNDAYLNLPHMMQPTSFISSNSKAQKFKWFPSKNFISMFPSPHGLLNLNAQPSVQVIHQRLQQLKQNGVVATSHSPQPQPQPHSSSSTNPKVVELEDFNIQNHAETLPPMQEGNCNSQVSSQKTIIGGGFEEKPQIDLLEFLQQMGILKEGIEEEKTDISSGSSTVSEAASRDENEQPGVFSDLSSSVNWEELIELHEHDHGVADNFYHASEEIQFEAYDINEDLTFSTSIWNY 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02828 311 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Pumo3g02828 311 MobiDBLite consensus disorder prediction 235 259 - -
Pumo3g02828 311 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Pumo3g02828 311 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Pumo3g02828 311 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Pumo3g02828 311 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 268 - -
Pumo3g02828 311 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Pumo3g02828 311 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Pumo3g02828 311 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Pumo3g02828 311 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Pumo3g02828 311 MobiDBLite consensus disorder prediction 146 166 - -
Pumo3g02828 311 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Pumo3g02828 311 MobiDBLite consensus disorder prediction 231 259 - -
Pumo3g02828 311 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02828 Pumo-Chr3 48924215 48925166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02828 5 311 AP2-EREBP Transcription Factor Family AT3G57600 46.580 6.79e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo3g02828 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02828 - - gmx:100808363 475.707