Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02816 ATGATGAACAACTTGACCATTGAGACTGAAGATTCTTTTGCAAGCTTGCTTGAGCTTGCAGCTAATAACGATGTTGAAGGTTTCAAGCGAATGATTGAGAGGGATCCTTCCTGTGTAGATGAGGTAGGACTATGGTACAGTCGTCAGAAGGGATCTAGGCGGATGGTCAATGAGCTTAGAACCCCATTGATGGTTGCTGCTACTTATGGTAGCATTGATATTTTGGATTTGATTCTCTCACTTTCTGGTTATGATATTAATAAACCTTGTGGCCTTGACAAGAGCACCGCCCTTCATTGTGCGGCTTCAGGCGGGGCTGAAAATGCTGTTGATGTTGTTATATTGCTTCTAGCAGCGGGGGCTGATCCAAATTCTGTGGATGGCAATGGTCATCGTCCAGTTGATGTCATTGTTGTTCCTCCTAAGCATGAATCTGTTAGAAACAGTCTTGAAGCACTTCTTCAAGCTGATGACTCCATTGCAGTGTGTAATCTCAGGGTGATCACAGCCCCATCAAATGCTTATTCTCCACCTTTATCAACTTCACCAGAGAATGGGTCTCCTTCTGCACAAGATTTCCAATTGAAGTCAAAGTTAAATGATGGCTTCGTTTCTTCTGCATCAGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCTGATATCAAGAATAGCATATATTCAACTGATGAATTCCGGATGTATTCTTTCAAAGTCCGACCTTGTTCACGTGCTTATTCACATGATTGGACTGAATGCCCATTTGTTCATCCAGGGGAGAATGCTAGAAGAAGGGACCCAAGAAAGTACCACTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCGTGCCGACGTGGAGATATGTGTGAATATGCTCATGGAGTTTTCGAGTGCTGGCTGCATCCAGCACAATATCGAACTCGTCTTTGCAAGGATGGGACAAGTTGCTCCAGAAGAGTTTGCTTTTTTGCTCACACTGCTGAGGAGCTTCGGCCATTATATGTTTCAACTGGTTCTGCTGTACCATCTCCACGCTCAAGCGCGTCTTCTGTTATGGATTTTGCTGCAGCCATGAACATGTTGCCTGGCTCTCCTTCCTCAATGTCTGTCATGTCTCCTTCACCGTTCACTCCACCTATGTCGCCCTCTGCCAATGGCATGTCACACCCTTCTGTTGGCTGGCCCCAACCAAATGTCCCAGCCTTGCATCTACCAGGGAGTAATATTCATTCAAGTCGTTTGAGATCTTCATTCAATGCTAGAGATATTCCTGTGGATGACTTTGACTTGTTGCCTGACTATGATGTTCAGCAACAGCAACAGCTCCTTAATGAGTTCTCTTGCCTCTCTAAACAGCCTATGAATTCTAATGCTATGAACCGCTCTGGTCGCATTAAAACCCTGACCCCTTCAAATCTTGATGATCTATTTTCTTCTGAGAGTTCATCTCCTCGGTTTGCTGATCCAGCATTGGCTTCAGCTGTTTTTTCTCCAACACATAAATCAGCTATCCTTAATCAGTTTCAGCAGCAGCAAAGCTTGCTGTCGCCTGTGAACACAAACTTTTCTTCTAAAAATGTCGAGAATCCATTATTGCAGGCTGGCTCTTTTGGGGTTCAAAATTCAGGAAGGATGTCTCCTCGAAATGTGGAACCTATTTCTCCAGTGAGCTCTCGGATTTCTGTGCTAGCTCAACGTGAGAAGCAGCAACAATTCCGAAGCCTTAGCTCCAGGGAACTTGGCTCCAACTCTGCTACTGCTGCTGCTGCCGCTGCCGCTGCTGCTGGGTCCCCAGTCAATTCTTGGTCAAAATGGGGATCCTCCAATGGTACACTGGATTGGGCTGTCAATGCAGATGAAATAGGGAAGCTACGTAGATCATCTTCATTTGAGCATGCAAATAACGGTGAGGAGCCTGATTTCTCATGGGTCCAGTCACTTGTTAAAGAATCTCCATCTGAGATTAAGGAGACTTCGGCGACGACGACTGTCTCAAGTGTTGCAGCAGCTGGATCCTCCAGTGAGGTATCAAATATGAGCACACAAATGGACACCGTTGATCATGCCGTGTTAGGAGCATGGCTTGAACAAATGCAGCTCGATCATCTTGTGGCTCAGCAAAATTAA 2133 0.4548 MMNNLTIETEDSFASLLELAANNDVEGFKRMIERDPSCVDEVGLWYSRQKGSRRMVNELRTPLMVAATYGSIDILDLILSLSGYDINKPCGLDKSTALHCAASGGAENAVDVVILLLAAGADPNSVDGNGHRPVDVIVVPPKHESVRNSLEALLQADDSIAVCNLRVITAPSNAYSPPLSTSPENGSPSAQDFQLKSKLNDGFVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASSVMDFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGMSHPSVGWPQPNVPALHLPGSNIHSSRLRSSFNARDIPVDDFDLLPDYDVQQQQQLLNEFSCLSKQPMNSNAMNRSGRIKTLTPSNLDDLFSSESSSPRFADPALASAVFSPTHKSAILNQFQQQQSLLSPVNTNFSSKNVENPLLQAGSFGVQNSGRMSPRNVEPISPVSSRISVLAQREKQQQFRSLSSRELGSNSATAAAAAAAAAGSPVNSWSKWGSSNGTLDWAVNADEIGKLRRSSSFEHANNGEEPDFSWVQSLVKESPSEIKETSATTTVSSVAAAGSSSEVSNMSTQMDTVDHAVLGAWLEQMQLDHLVAQQN 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02816 710 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Pumo3g02816 710 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Pumo3g02816 710 Gene3D - 273 334 - -
Pumo3g02816 710 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Pumo3g02816 710 PANTHER UNKEMPT FAMILY MEMBER 18 653 IPR045234 -
Pumo3g02816 710 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Pumo3g02816 710 SMART ANK_2a 11 40 IPR002110 GO:0005515
Pumo3g02816 710 SMART ANK_2a 93 125 IPR002110 GO:0005515
Pumo3g02816 710 SMART ANK_2a 58 88 IPR002110 GO:0005515
Pumo3g02816 710 SUPERFAMILY Ankyrin repeat 10 139 IPR036770 -
Pumo3g02816 710 Gene3D - 9 160 IPR036770 -
Pumo3g02816 710 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Pumo3g02816 710 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Pumo3g02816 710 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Pumo3g02816 710 Pfam Ankyrin repeats (3 copies) 50 127 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02816 Pumo-Chr3 48136575 48140833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02816 4 703 C2H2 Transcription Factor Family AT5G12850 53.501 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo3g02816 Ank_2 1.6e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02816 - - gmx:100813554 1256.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02816 3 48136575 48140833 Pumo3g02816 3 48136575 48140833 ECH