Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02805 ATGGAGAAGATGGCAGCACTCACCACTAATACTATCCACACCTCTCTCTTCTCCACCAACACCACTCTTCCAAAGACATCATCTTTTCAACCCTTCTTCTCTAACCAACTTCTTGGCCTCCCCTTATCTTCTTCTTCTTCTGCTTCTGTTTCTTTAACAGCCGCCAAACGGTTCTCTTGCAGGCCCATCAAATGTTCCGTTTCTGAAGCCACAGAGCCCAAAACTGAGAAGAAGAGGCAATGGCTGAGAAGAGGGGACGTGAGGAACATAGCCATTGTTGCTCACGTTGACCATGGGAAAACTACTCTCGTTGATGCCATGCTCAAACAGACTAAGGTATTTCGTGATAATCAATTTGTGCAGGAAAGGATAATGGACTCAAATGATTTGGAGCGCGAAAGAGGAATCACAATACTGAGTAAAAACACATCTGTCACCTATAAAGACACGAAGATTAATATAATAGATACTCCAGGTCACTCTGATTTTGGGGGTGAAGTGGAGCGCATCTTAAATATGGTGGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTGAAGAAGGCTTTAGAGTTTGATAGGCCTTCTGCTCGCCCAGAATATGTCGTGAACTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGGCAAGCAGGGTTGTCTCCTGAAAATCTGGCAGAAGACCTTGGTCCATTGTTTGAATCCATCATTAGATGCATCCCTGGACCACGTATTGACAAAGATGGTGCCCTTCAAATGCTTGTTACAAATATTGAGTATGATGAACATAAAGGGCGTATAGCAATTGGGCGTGTGCAAGCTGGAGTTTTAGAAAAAGGCATGGATGTCCGAGTATGTACTTCAGATGATTCATGTAGATATGGAAGAGTTAGTGAGCTTTATGTGTATGACAAATTCAGTAGGGTCCCTGCAGATAATGTGGAGGCAGGTGATATATGTGCAGTATGTGGAATTACTGATATTCAGATTGGGGAGACAATTGCTGATAAAGTATCTGGGAAACCACTACCTTCCATCAAGGTCGAAGAACCGACAGTGAAAATGTCTTTCTCCATAAACACTTCACCTTTTGTTGGCCGTGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGATAGGCTTTATCGTGAACTTGAGAGGAATCTGGCTATGAAAGTTGAAGATGGTGAAACAGCTGATACATTTGTTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTGAATGAACAACTGTTGGAACCGTATGAGATTGCAACTGTGGAGGTACCAGAAGTGCACATGGGAGCTGTTGTTGAACTTCTTGGCAAGAGACGAGGACAAATGTTTGATATGCAAGGAGTTGGATCGGAAGGAACTACACTACTCAAATATAAGATCCCAACCCGTGGTCTTCTTGGATTGCGGAATTCAATTTTAACCGCCTCCCGAGGGACAGCTATTCTCAACACTGTCTTTGATAGCTATGGGCGTTGGGCTGGCGAGATTAGCACTCGGGATCAAGGCTCACTGGTTGCTTTTGAGGATGGAACAAGTACTTCTTATGCCATCTCTAGTTCACAGGAGAGGGGACAGATGTTTATTGGTCCTGGAGTGGATGTTTATAAAGGTCAAATTGTTGGCATCCATCAGCGACCTGGGGACTTGTCGTTGAACGTTTGCAAGAAGAAAGCTGCAACGAACATACGTTCCAACAAGGAACAAACAGTGATTCTTGATACGCCATTGGACTATAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGGTCACCCCCGCAAGTATCCGAATGTGCAAGAATCCAAAAATTACAAACAAGAAAACAAGGTAG 2010 0.4299 MEKMAALTTNTIHTSLFSTNTTLPKTSSFQPFFSNQLLGLPLSSSSSASVSLTAAKRFSCRPIKCSVSEATEPKTEKKRQWLRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFDRPSARPEYVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAEDLGPLFESIIRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRVQAGVLEKGMDVRVCTSDDSCRYGRVSELYVYDKFSRVPADNVEAGDICAVCGITDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNEQLLEPYEIATVEVPEVHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNSILTASRGTAILNTVFDSYGRWAGEISTRDQGSLVAFEDGTSTSYAISSSQERGQMFIGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPASIRMCKNPKITNKKTR 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02805 669 Gene3D bipa protein 554 662 IPR042116 -
Pumo3g02805 669 FunFam GTP-binding protein TypA 460 553 - -
Pumo3g02805 669 PRINTS GTP-binding elongation factor signature 89 102 IPR000795 GO:0003924|GO:0005525
Pumo3g02805 669 PRINTS GTP-binding elongation factor signature 133 141 IPR000795 GO:0003924|GO:0005525
Pumo3g02805 669 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Pumo3g02805 669 NCBIfam translational GTPase TypA/BipA 87 668 IPR006298 GO:0003924|GO:0005525
Pumo3g02805 669 SUPERFAMILY EF-G C-terminal domain-like 374 458 IPR035647 -
Pumo3g02805 669 CDD BipA_TypA_C 469 548 IPR035651 -
Pumo3g02805 669 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 85 269 IPR000795 GO:0003924|GO:0005525
Pumo3g02805 669 SMART EFG_C_a 466 555 IPR000640 -
Pumo3g02805 669 Gene3D Translation factors 270 370 - -
Pumo3g02805 669 Gene3D - 460 553 - -
Pumo3g02805 669 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 548 664 - -
Pumo3g02805 669 FunFam GTP-binding protein TypA 270 370 - -
Pumo3g02805 669 FunFam GTP-binding protein TypA 554 640 - -
Pumo3g02805 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 276 IPR027417 -
Pumo3g02805 669 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 126 141 IPR031157 -
Pumo3g02805 669 SUPERFAMILY EF-G C-terminal domain-like 469 584 IPR035647 -
Pumo3g02805 669 CDD BipA_III 376 454 IPR047043 -
Pumo3g02805 669 FunFam GTP-binding protein TypA 84 269 - -
Pumo3g02805 669 Pfam Elongation factor Tu GTP binding domain 87 212 IPR000795 GO:0003924|GO:0005525
Pumo3g02805 669 SUPERFAMILY Translation proteins 222 369 IPR009000 -
Pumo3g02805 669 Gene3D - 85 269 IPR027417 -
Pumo3g02805 669 CDD BipA_TypA_II 276 369 IPR047042 -
Pumo3g02805 669 Pfam Elongation factor Tu domain 2 290 359 IPR004161 GO:0005525
Pumo3g02805 669 Pfam Elongation factor G C-terminus 466 552 IPR000640 -
Pumo3g02805 669 CDD TypA_BipA 86 268 IPR047041 -
Pumo3g02805 669 Gene3D Elongation Factor G (Translational Gtpase), domain 3 377 660 - -
Pumo3g02805 669 FunFam GTP-binding protein TypA 377 484 - -
Pumo3g02805 669 NCBIfam small GTP-binding protein domain 88 195 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02805 Pumo-Chr3 47794869 47802939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02805 87 198 Eukaryotic Initiation Factors Gene Family AT3G22980 45.614 1.20e-21 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02805 K06207 - gmx:100785222 1242.25