Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02804 ATGGGCAACTGTTGCGTTGTGCCGTCGGGCAAGAACCGAAAGGAGAAGAAACACAAGAAGAAGCGGAACGCCTACGACGAGGAGGGGCCGGGGAAGAACCTGGTGGTGCTGAAGGAGCCCACGGGCCGGGACATCGGGCTGCGGTACGACCTGGGCCGGGAGCTGGGCCGGGGCGAGTTCGGGGTGACGTACCTGTGCCGCGACAAGGAAACGAAGGAGGAATTCGCGTGCAAGAGCATTTCCAAGAAGAAGCTGCGAACGGCGATTGATATTGAAGATGTGAGGAGAGAGGTGGAGATCATGAAGCACTTGCCGAAACACCCGAACGTCGTGTCGTTGAAGGACACGTACGAAGACGACGATGCCGTTCACCTCGTCATGGAACTCTGCGAGGGCGGCGAGCTCTTTGATCGCATCGTGGCTCGCGGCCACTATACGGAACGCGCCGCCGCCGCCGTCACCAGAACCATCGTCGAAGTCGTCCAGATGTGCCACGAACAAGGTGTGATGCATCGTGATCTCAAACCTGAGAACTTCTTGTTTGGAAACAAGAAGGAAACAGCACCTCTGAAAGCTATTGACTTTGGATTGTCAGTTTTCTTCAAACCAGGTGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGCGTAATTATGGCCCTGAAGTAGATATCTGGAGTGCTGGAGTTATTCTCTACATCTTACTTTGTGGTGTCCCACCTTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAAGCAATTATTCGATCTGTTGTTGATTTTAGAAGGGAGCCATGGCCGAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGATCAAAAGCGCAGGCTTACTGCACAAGAAGTGTTAGATCATCCATGGTTACAGAATGCAAATAAAGCTCCTAATGTTTCATTGGGAGAAACTGTTAGATCAAGGCTCATGCAATTTTCTGTCATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGCAGAGCATTTGTCTTTAGAAGAAGCTGCTGGAATAAAAGAGGGATTCCAACTGATGGATACAAGCAATAATGGCAAGATTAACATTGATGAACTGCGAGTAGGGTTGCAAAAACTAGGTCACCAAATTCCTGAAGGAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACAAAGATGGGTACCTAGATTATGGCGAGTTTGTTGCCATTTCTATTCATCTGAGAAAGATAGACCATGATGAGCACCTTCACAAAGCCTTCCAATTTTTTGATAAGAACCAAAGTGGATATATTGAAATTGAGGAGTTACATAATGCCTTAGCTGATGAGGTTGAAACAAACAGTGAAGAAGTCACCAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCTGCAATGATGAAATCAGGCACAGATTGGAGGAAAGCATCAAGGCAGTATTCAAGAGAGAGGTTCTCTAGTCTAAGTCAGAAATTGATGAAAGACGGGTCTTTGCAATTAAACAATAATGAGGGTAGATGA 1581 0.4605 MGNCCVVPSGKNRKEKKHKKKRNAYDEEGPGKNLVVLKEPTGRDIGLRYDLGRELGRGEFGVTYLCRDKETKEEFACKSISKKKLRTAIDIEDVRREVEIMKHLPKHPNVVSLKDTYEDDDAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQMCHEQGVMHRDLKPENFLFGNKKETAPLKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFRREPWPKVSDNAKDLVKKMLDPDQKRRLTAQEVLDHPWLQNANKAPNVSLGETVRSRLMQFSVMNKLKKRALRVIAEHLSLEEAAGIKEGFQLMDTSNNGKINIDELRVGLQKLGHQIPEGDVQILMEAGDVDKDGYLDYGEFVAISIHLRKIDHDEHLHKAFQFFDKNQSGYIEIEELHNALADEVETNSEEVTNAIMHDVDTDKDGRISYEEFAAMMKSGTDWRKASRQYSRERFSSLSQKLMKDGSLQLNNNEGR 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02804 526 CDD EFh 426 488 IPR002048 GO:0005509
Pumo3g02804 526 ProSitePatterns EF-hand calcium-binding domain. 363 375 IPR018247 -
Pumo3g02804 526 Gene3D - 316 491 - -
Pumo3g02804 526 MobiDBLite consensus disorder prediction 1 28 - -
Pumo3g02804 526 Pfam EF-hand domain pair 355 414 IPR002048 GO:0005509
Pumo3g02804 526 Pfam EF-hand domain pair 425 488 IPR002048 GO:0005509
Pumo3g02804 526 FunFam calcium-dependent protein kinase 13 135 315 - -
Pumo3g02804 526 FunFam Calcium-dependent protein kinase 7 316 491 - -
Pumo3g02804 526 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Pumo3g02804 526 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Pumo3g02804 526 ProSitePatterns EF-hand calcium-binding domain. 435 447 IPR018247 -
Pumo3g02804 526 Gene3D Phosphorylase Kinase; domain 1 51 134 - -
Pumo3g02804 526 SMART efh_1 354 382 IPR002048 GO:0005509
Pumo3g02804 526 SMART efh_1 390 418 IPR002048 GO:0005509
Pumo3g02804 526 SMART efh_1 426 454 IPR002048 GO:0005509
Pumo3g02804 526 SMART efh_1 462 490 IPR002048 GO:0005509
Pumo3g02804 526 SUPERFAMILY Protein kinase-like (PK-like) 48 321 IPR011009 -
Pumo3g02804 526 SUPERFAMILY EF-hand 336 510 IPR011992 -
Pumo3g02804 526 ProSitePatterns EF-hand calcium-binding domain. 399 411 IPR018247 -
Pumo3g02804 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Pumo3g02804 526 Pfam Protein kinase domain 49 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02804 526 CDD STKc_CAMK 48 306 - -
Pumo3g02804 526 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
Pumo3g02804 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 34 483 - -
Pumo3g02804 526 FunFam Calcium-dependent protein kinase 1 51 134 - -
Pumo3g02804 526 SMART serkin_6 49 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02804 526 ProSiteProfiles Protein kinase domain profile. 49 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02804 526 Gene3D Transferase(Phosphotransferase) domain 1 135 315 - -
Pumo3g02804 526 ProSiteProfiles EF-hand calcium-binding domain profile. 422 457 IPR002048 GO:0005509
Pumo3g02804 526 ProSiteProfiles EF-hand calcium-binding domain profile. 350 385 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02804 Pumo-Chr3 47717056 47723266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02804 1 520 EF-hand Containing Proteins AT5G19450 77.127 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo3g02804 Pkinase 2.5e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02804 K13412 - gmx:100815320 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02804 3 47717056 47723266 Pumo3g02804 3 47717056 47723266 ECH
Pumo5g02589 5 71335288 71341259 Pumo3g02804 3 47717056 47723266 PCT