Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02802 ATGGGAACTCCCGAATTCCCAGATCTGGGAAAGCACTGTGCTGTCTCCGATTGCAAGTTGATCGATTTCTTGCCTTTCACTTGCGATCGCTGCGACCAGGTGTATTGTTTGGAGCACAGAAGTTATATTAAACATCAGTGTACAAAAGCTGACAAGCAAGATGTCACTGTAGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACTGAGTGCGACCCATCGAATTATGAGAAAGTCTCAAAGAAGAAAAAATGCCCTGCCCCTGGATGCAGAGAGATATTAGTATTCTCAAACACAATTAAGTGCAAGGACTGCACGGTAGAGCATTGTTTAAAGCATCGGTTTGGACCCGATCATAAATGTCCTGGTCCCAAAAAAGTGGAAACAAGTTTTTCATTCATGAGTCTTTTGAATGGGAGTAAAAAACAGGAGTCCAAACCCAGGTCATGCTCAAGCACATCATCTAAATGGACTACAAGCTTTCTCAATGCGGCTTCTAACATGCGAGCTTCGGCCGAGGCTGGAGTGTCAAAGTTGGGTGGTGAAATTAACCAAGCCTGGCAGACAGCAAGGGGTGGGGTGGGACAGAGCCATAGCAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGCCAAGTTTTCCTCGGTTACTACTTTGGTGGACCATGTGCAAAAAGTTCATGAAAGGAGCGGCAACCGATCTGGAGCCAAGGTTACAATCGATGTTTGTCCAAAGTGTAGTAGAGGATTTCGAGATCCTGTGGCCCTTGTGGAACATGTTGAGAGGGATCATGGTGGAAGTTCTAGATCGTAG 861 0.4588 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDRCDQVYCLEHRSYIKHQCTKADKQDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVSKKKKCPAPGCREILVFSNTIKCKDCTVEHCLKHRFGPDHKCPGPKKVETSFSFMSLLNGSKKQESKPRSCSSTSSKWTTSFLNAASNMRASAEAGVSKLGGEINQAWQTARGGVGQSHSSGQVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRSGAKVTIDVCPKCSRGFRDPVALVEHVERDHGGSSRS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02802 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 248 IPR013087 -
Pumo3g02802 286 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Pumo3g02802 286 Pfam C2H2-type zinc finger 221 243 - -
Pumo3g02802 286 Gene3D - 2 60 IPR035896 -
Pumo3g02802 286 ProSitePatterns Zinc finger C2H2 type domain signature. 259 280 IPR013087 -
Pumo3g02802 286 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Pumo3g02802 286 SMART c2h2final6 257 280 IPR013087 -
Pumo3g02802 286 SMART c2h2final6 220 243 IPR013087 -
Pumo3g02802 286 Gene3D - 80 152 IPR035896 -
Pumo3g02802 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 285 IPR013087 -
Pumo3g02802 286 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Pumo3g02802 286 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Pumo3g02802 286 ProSitePatterns Zinc finger C2H2 type domain signature. 222 243 IPR013087 -
Pumo3g02802 286 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 248 - -
Pumo3g02802 286 Gene3D Classic Zinc Finger 198 283 - -
Pumo3g02802 286 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Pumo3g02802 286 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Pumo3g02802 286 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Pumo3g02802 286 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Pumo3g02802 286 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02802 Pumo-Chr3 47644852 47648742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02802 1 286 C2H2 Transcription Factor Family AT2G41835 62.847 8.12e-129 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02802 zf-AN1 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02802 - - gmx:100786272 551.977