Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02790 ATGAAAATTCTATGCTTGTTGCATTTTCTGTTAACTTGGTATCTGTCAAAATCTCTGCTTGTGGGTGCTGAGTTGCAGGAACAAACTACACTACTTGCCATCAAGCAAGAGCTTAGAGTCCCTGGATGGAATGCCAACAACAACAACAACTCAGATTACTGCTCATGGGAAGGTGTCACCTGTGGCCATGGCCATCATCACTCACTTGTGGAGAAGCTCATTCTCTCTAATCAGAATCTTGGAGGTGATGTAAGTTCAATTTCCAGACTCAAAGCTTTGAAGTGGCTTGACCTTTCAAATAATGATTTTCATGGGGTGATTCCTTCTGCTATTGGAAAGTTATCTCATCTTGAGTATCTTGACTTGTCTTTAAACAAGTTTGAAGGTTCAATTCCTCCAGAATTGGGTGCTCTCAGGAGCCTCAAAACATTGAACCTTTCCAGTAACTTGCTGGTGGGAGAGATTCCAAAGGAGCTTCAAGGCCTTGAGAGTTTACAGGATTTTCAAGTTTTCAACAATCAATTGAGTGGTTTGATACCATCTTGGGTGGGGAATTGGACCAATCTGAGAGTTTTTGCTGCTTATGAGAATGATTTCAATGGAAGGATTCCAGGTACACTGGGATTCATTTCTGAGCTGAAAATACTTAACCTGCATTCAAACCACCTTGAAGGCCCTATTCCAGGAAGCATTTTTTCTCCAGGGAAGCTTGAAGTTCTGATCCTCACTCAGAACAATTTAAGTGGTGATCTTCCTGAGGAAATTGGGGATTGTCAAACCCTTTTCAGTGTTCGAATTGGCAACAACAATCTAGCAGGTAATATTCCTAAGAGTGTTGGAAATCTTTCTAGCCTTGCCTACTTTGAAGCTGATCATAATAATCTTTATGGTGAGCTGGTATCAGAGTTTTCTTTGTGTTCAAATCTCATCTTCTTGAACTTGGCTTCAAATGGATTCACTGGAACAATTCCACCAGAATTTGGACAGCTTATTAATCTGCAGGTGTTGATGCTTTCTGGAAATCACCTTTTTGGTGATATTCCAGAATCAATTCTGCAGTGCAAGAATCTTAGCATGCTTGACTTAAGCAATAACAGGTTCAATGGAACAATACCAAATGAAATCTGCAATATCACTCAGTTGCAGAACTTGCTGTTGGGTCAGAATTCCATAAGAGGAGTGATCCCTCATGAAATTGGAAGGTGTAGAAAGCTTCTCGAATTGCAATTGGGCAGCAACCATTTGACTGGAACTATTCCTGCTGAGATTGGTTACATGTATAACTTAGAGATAGCTTTAAATTTGAGCTATAACCATCTTCATGGACCATTGCCCTCTCAATTAGGAAGACTACTCAAACTTGGTTGTCTGGATGTTTCCAACAATAATCTCTCAGGTAATATCCCAGATGCACTTAACAGGATGTTAAGCTTGATTATGGTTAACTTGTCAAATAATCAGCTCAGTGGTCCATTGCCACATTATGGATCATTCCAGAAGAATCCTGCTTCAAGTTATTTGGGAAACAAAGGGCTGTGTGGGGAGCCATTAAACACAACATGTGAAGATCATCATGATGATTATGAGCCTACGGAATACCAGTACCATCATGATATTGTTTATGAAACCATATTTGGAGCATGTTTTGCAGGTTTTATAGCACTAACTGTTTATGTCCATATCATCATAAAGGGGCAAGAACAAGTAGCAGATGAGGTTGTGATAGAAGGTGATGGAACCAACAACAAACCATCTATAATATCAGGAAGGGTTTTTGTTGACGATCTAAGACAAGCAGTGGACCTTGATGCTGTTGTTAGAGCAACTCTGAATGAATCTAATAAGCTTAGCAAGGGCACATTTAGTACAGTTTACAAGGCATTCATGCCCTCTGGGACAGTCTTACTTGTAAGGAAACTTATCTCAATGGACATGACCGTAATGCACTACCAAAGCAAGATAATTATCGAGCTTCGAAGGCTGAGCAAACTATGTCATGAAAATGTATTGAAACCCATTGGATATGTTATTTGTAGTGATGTTGCTCTTCTCATTCATCAGTATCTACCCAATGGAACATTGGCTCAACTTCTTCATGAATCTATAATGCAACCTGGATATCTGCCTGACTGGCCTGCTAGACTATCTATTGCAATGGGAGTGGCAAAAGGTTTGGCTTTCCTTCATCACTTGGCAATCATCCACCTTGACATTTCTTCTAGCAATGCTCTACTGGATGCAAATTTTAAGCCATTGATTGGGGACATTGAGATATCAAAATTTCTAGATCCAACCAAAGGCACTGCTAGGATTATCCCATATGTTGGTACCTTCGGTTACGTTCCACCAGATCGACTGATCGAGCAAGCGTTTGCTCTTTCAGACTTGACGCTTGAGTGGCTGTGGACCGTCCGTGAGGACGAGTGGGTCTTTGATCCATAG 2442 0.4058 MKILCLLHFLLTWYLSKSLLVGAELQEQTTLLAIKQELRVPGWNANNNNNSDYCSWEGVTCGHGHHHSLVEKLILSNQNLGGDVSSISRLKALKWLDLSNNDFHGVIPSAIGKLSHLEYLDLSLNKFEGSIPPELGALRSLKTLNLSSNLLVGEIPKELQGLESLQDFQVFNNQLSGLIPSWVGNWTNLRVFAAYENDFNGRIPGTLGFISELKILNLHSNHLEGPIPGSIFSPGKLEVLILTQNNLSGDLPEEIGDCQTLFSVRIGNNNLAGNIPKSVGNLSSLAYFEADHNNLYGELVSEFSLCSNLIFLNLASNGFTGTIPPEFGQLINLQVLMLSGNHLFGDIPESILQCKNLSMLDLSNNRFNGTIPNEICNITQLQNLLLGQNSIRGVIPHEIGRCRKLLELQLGSNHLTGTIPAEIGYMYNLEIALNLSYNHLHGPLPSQLGRLLKLGCLDVSNNNLSGNIPDALNRMLSLIMVNLSNNQLSGPLPHYGSFQKNPASSYLGNKGLCGEPLNTTCEDHHDDYEPTEYQYHHDIVYETIFGACFAGFIALTVYVHIIIKGQEQVADEVVIEGDGTNNKPSIISGRVFVDDLRQAVDLDAVVRATLNESNKLSKGTFSTVYKAFMPSGTVLLVRKLISMDMTVMHYQSKIIIELRRLSKLCHENVLKPIGYVICSDVALLIHQYLPNGTLAQLLHESIMQPGYLPDWPARLSIAMGVAKGLAFLHHLAIIHLDISSSNALLDANFKPLIGDIEISKFLDPTKGTARIIPYVGTFGYVPPDRLIEQAFALSDLTLEWLWTVREDEWVFDP 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02790 813 SMART LRR_typ_2 210 234 IPR003591 -
Pumo3g02790 813 SMART LRR_typ_2 378 402 IPR003591 -
Pumo3g02790 813 SMART LRR_typ_2 235 258 IPR003591 -
Pumo3g02790 813 SMART LRR_typ_2 330 354 IPR003591 -
Pumo3g02790 813 SMART LRR_typ_2 90 113 IPR003591 -
Pumo3g02790 813 SMART LRR_typ_2 114 137 IPR003591 -
Pumo3g02790 813 SMART LRR_typ_2 451 475 IPR003591 -
Pumo3g02790 813 SMART LRR_typ_2 138 161 IPR003591 -
Pumo3g02790 813 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 230 525 - -
Pumo3g02790 813 FunFam Nuclear pore complex protein NUP107 24 181 - -
Pumo3g02790 813 ProSiteProfiles Protein kinase domain profile. 610 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02790 813 SUPERFAMILY L domain-like 264 517 - -
Pumo3g02790 813 Pfam Protein kinase domain 612 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02790 813 Gene3D Ribonuclease Inhibitor 26 176 IPR032675 -
Pumo3g02790 813 Gene3D Ribonuclease Inhibitor 177 233 IPR032675 -
Pumo3g02790 813 SUPERFAMILY L domain-like 27 297 - -
Pumo3g02790 813 Gene3D Transferase(Phosphotransferase) domain 1 593 795 - -
Pumo3g02790 813 Pfam Leucine rich repeat N-terminal domain 27 61 IPR013210 -
Pumo3g02790 813 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Pumo3g02790 813 Gene3D Ribonuclease Inhibitor 234 524 IPR032675 -
Pumo3g02790 813 PANTHER OS01G0149700 PROTEIN 12 278 - -
Pumo3g02790 813 SUPERFAMILY Protein kinase-like (PK-like) 609 789 IPR011009 -
Pumo3g02790 813 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 580 688 - -
Pumo3g02790 813 Pfam Leucine rich repeat 312 367 IPR001611 GO:0005515
Pumo3g02790 813 Pfam Leucine rich repeat 70 126 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02790 Pumo-Chr3 47275878 47279015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02790 1 784 Receptor kinase-like Gene Family AT2G41820 57.722 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo3g02790 Pkinase 1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02790 - - vum:124827200 1081.24