LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g02774	ATGGCTCTGCGATCATGTTCCTCTTCCTTTACCTATCACTGTGAATATGATGTGTTCCTGAGCTTCAGAGGGGAAGACACGCGTCATGGTTTTACTGGGCATCTCTACAAAGCTCTTGATGGCAGGGGAATCCGCACTTTCATGGATGATGAGAAGCTTCAAAGAGGAGAGGAAATAACACCGGCACTTGTGAAGGCAATTCAAGAGTCCAGGATTGCCATCATTGTGCTCTCAAAAGACTATGCTTCTTCCTCATTTTGTTTACATGAACTTGCAACTATCCTTGAGTGCCTTAAGGGAAAAGATCGGTTGGTTTTGCCGGTTTTTTATAAGGTAGATCCTTCTCATGTACGTCACCAGAAAGGTAGTTATGGAGATGCATTGGCTCGGCATGAGGAGAGGTTCAAAGCTGAGAAGGACAAGTTGGAGAAATGGAAGATGGCTCTGCATCAAGTTGCTAACTTGTCTGGCTACCATTTCAAAGACGGAGATGAATATGAATACAAGTTTGTTGAGAAGATTGTTGAGCAGGTCTCTAGCAAGATTAACCATGTTCCTTTACATGTTGTGGAGTACCCGGTTGGACTTGAGTCACAAGTGCTAAAAGTAAGGAAGCTTTTGGATGTTGGATGTGATGATGGTGTCCACATGATCGGGATCCGCGGAATGGGTGGGATAGGAAAATCAACACTTGCTCGAGCTGTCTATAATAATTTAATTGCTGAGAATTTTGATGGTTTCTGTTTTCTAAAAAATGTAAGAGAAGAATCAAACAAACATGGGTTAGAACACCTACAAAGAATCCTCCTTTTGAAAATACTTAGAGAGAAGGACATCAACTTTACATGTTGGGAAGAAGGAGCTTCAATGATACCACAAAAGCTCCATCAAAAGAAGGTTCTCCTGGTTCTAGATGATGTTGACAAGCCCGAGCAATTACATGCAATTGCTGGAAGACAAAATTGGTTTGGTCCCGGCAGCAGAATCATCATCACAACTCGGGACAAACAATTGTTAGCACCTCATGAAGTTATTGAGATATATGAGGTGAAGGAATTGAACAACAATGATGCACTTCAATTACTTACATGGAAAGCTTTTAAAAAGAAAAAAGTTGATCCAAGGTACGAGCAGGTTTTGAATCGTGTAGTAAAATATGCTTCTGGCCTTCCATTGGCTTTGGAAGTGATAGGTTCCAACTTGTTTGGAAAAAGTATTGAAAAATGGGAAGATGCCATAAATCAGTATGAAAGAAGTCTTCCTGATGGAATCCAAGGTATTCTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGGGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAATGGATATGAATTGACAAAGGTTGAAGATATACTTTGTGCTCATTATGGTCACAACATGAAATGTCATATTGACGTGTTGGTTGAAAAATCTCTCATGAAGCTCAATTATTTTGATGATTCCACAGTTACATTGCATGACTTGATTGAGCACATGGGTAAAGACATTGTAAGGCAGGAATCACTAGATGAACCAGAAGAGCGCAGTAGATTATGCTCATGGGAAGATATAAAACAAGTTTTGGAAGACAATACTGGAACTAGTAAAATTAAAATCATATGTCTGGAATTCCCCATATTTAGCAAAGAAATGGTAGAATGGGATGGAGAGGCATTCAAGAAGATGCAAAAGCTCAGAACACTCATTATTAAAAATGGTAATTTTTCCAAAGGTCCCAAATATCTTCCAAATAGTTTGAGAGTACTGGAATGGTGGGGATATCCTTCACATTGTTTACCATCTGATTTTCAATGGAAGAAACTGAAGTTCATGAATCTAACGGTTTTGAATTTTGACGGGTGCAAATATTTAACACAGATACCTAATGTATCTGGTTCCCCAAATTTGGAGAAACTTTCATTTGAAAGGTGTGATAAATTAGTTAAAGTTCACGAGTCGGTTGGTTCTCTTGGTAAACTAAAAATATTGAGTGCTTTTGGTTGCACCAAGCTTGAGAATTTTCCATCCATCCATTTGACCTCTCTAACAGAACTTAATCTTTCATTCTGTTCGAGTCTTGAGAGCTTTCCAAAAATATTAGGAAAAATGGAAAACATAAGGGAACTTCATTTGGTGAACACTCCCATAAAACAATTGCCATTTTCATTTCACTATCTTATCCGACTCGAATGTTTATCAGTGAATGACTGTGGAAGTGTTCAGTTTCCAAGTAGCATTGTCATGATGCCAGAACTGACAAACATTGATATTTCGCATTTGAAAGAGTGGAAATGGATAAAACAGGAAGAGGATGAAGAAAATGTGGACTCAATAGTAACTTCGAAGGAATCGCAATTGGCTCAAATCTATGAATTTTGTTTGCCTGGAATATGTATTCCAGAGTGGTTTGATCATGAAAGCAGGGGACCTTCAAGTTCTTTCTGGTTTCGTAATAAGCTCCCTAACAAAATTCTTTGTTTTCTAATTGCACCTGTGGAATACAATTATTGGCACTGTCCACCTGTGGTGCTCATCAATGGCAAAGTTCATGGATCTTCCTTACATAGGGACAAGGAAACAGTGAGGATGGAAATGGATCATACATATCTTTCTGTTATAGATTTGAGTTATTCTCAGTTTGAAGTGCCTTCAGAAAATGAATGGAACCATGTGGAGGTTACATATGCGGGTGTCATAAAGACCTCAATTGTTAAAGCAAGCGGAATCCATGTATTCAAACAGGAAAGCAGCACAGAAGATATTCGATTCACTGATCCTAACAAGAAGAGAAAATTAGATGATTATCTCAACAGCTCGGAATCATGA	2835	0.3855	MALRSCSSSFTYHCEYDVFLSFRGEDTRHGFTGHLYKALDGRGIRTFMDDEKLQRGEEITPALVKAIQESRIAIIVLSKDYASSSFCLHELATILECLKGKDRLVLPVFYKVDPSHVRHQKGSYGDALARHEERFKAEKDKLEKWKMALHQVANLSGYHFKDGDEYEYKFVEKIVEQVSSKINHVPLHVVEYPVGLESQVLKVRKLLDVGCDDGVHMIGIRGMGGIGKSTLARAVYNNLIAENFDGFCFLKNVREESNKHGLEHLQRILLLKILREKDINFTCWEEGASMIPQKLHQKKVLLVLDDVDKPEQLHAIAGRQNWFGPGSRIIITTRDKQLLAPHEVIEIYEVKELNNNDALQLLTWKAFKKKKVDPRYEQVLNRVVKYASGLPLALEVIGSNLFGKSIEKWEDAINQYERSLPDGIQGILKVSFDALEEEGKSVFLDIACCFNGYELTKVEDILCAHYGHNMKCHIDVLVEKSLMKLNYFDDSTVTLHDLIEHMGKDIVRQESLDEPEERSRLCSWEDIKQVLEDNTGTSKIKIICLEFPIFSKEMVEWDGEAFKKMQKLRTLIIKNGNFSKGPKYLPNSLRVLEWWGYPSHCLPSDFQWKKLKFMNLTVLNFDGCKYLTQIPNVSGSPNLEKLSFERCDKLVKVHESVGSLGKLKILSAFGCTKLENFPSIHLTSLTELNLSFCSSLESFPKILGKMENIRELHLVNTPIKQLPFSFHYLIRLECLSVNDCGSVQFPSSIVMMPELTNIDISHLKEWKWIKQEEDEENVDSIVTSKESQLAQIYEFCLPGICIPEWFDHESRGPSSSFWFRNKLPNKILCFLIAPVEYNYWHCPPVVLINGKVHGSSLHRDKETVRMEMDHTYLSVIDLSYSQFEVPSENEWNHVEVTYAGVIKTSIVKASGIHVFKQESSTEDIRFTDPNKKRKLDDYLNSSES	944

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g02774	944	Gene3D	-	13	182	IPR035897	-
	Pumo3g02774	944	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	16	753	IPR044974	GO:0006952
	Pumo3g02774	944	FunFam	Disease resistance protein (TIR-NBS-LRR class)	12	184	-	-
	Pumo3g02774	944	Coils	Coil	128	148	-	-
	Pumo3g02774	944	Pfam	TIR domain	16	185	IPR000157	GO:0007165
	Pumo3g02774	944	SUPERFAMILY	"Winged helix" DNA-binding domain	423	532	IPR036390	-
	Pumo3g02774	944	PRINTS	Disease resistance protein signature	387	401	-	-
	Pumo3g02774	944	PRINTS	Disease resistance protein signature	217	232	-	-
	Pumo3g02774	944	PRINTS	Disease resistance protein signature	294	308	-	-
	Pumo3g02774	944	PRINTS	Disease resistance protein signature	680	696	-	-
	Pumo3g02774	944	Gene3D	-	352	436	IPR042197	-
	Pumo3g02774	944	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	446	IPR027417	-
	Pumo3g02774	944	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	158	IPR035897	-
	Pumo3g02774	944	SUPERFAMILY	L domain-like	556	764	-	-
	Pumo3g02774	944	Gene3D	Ribonuclease Inhibitor	526	774	IPR032675	-
	Pumo3g02774	944	Pfam	NB-ARC domain	197	424	IPR002182	GO:0043531
	Pumo3g02774	944	ProSiteProfiles	TIR domain profile.	14	182	IPR000157	GO:0007165
	Pumo3g02774	944	SMART	till_3	15	155	IPR000157	GO:0007165
	Pumo3g02774	944	Gene3D	-	183	347	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g02774	Pumo-Chr3	46716532	46720859	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g02774	10	761	WRKY Transcription Factor Family	AT4G12020	30.262	4.02e-78	277

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g02774	-		-	gmx:100817425	1035.4