Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02746 ATGGAGGAAGAGAGTGATAAAGGGTTGTTGGAATGTGTAAGAAAATTCTCTACACCACCCTTCTTATTGAAGACCTATATGTTGGTTGAGGATCCTGCCACCAATGATGTTGTGTCGTGGAATGGTGATGGGACAACGTTTGTGGTGTTGCAACCGGTTGAGTTTGCACGTGATCTGCTCCCAACACTCTTCAAGCACAACAACTTCTCTAGCTTTGTTCGCCAGCTGAATACCTATGGATTTCGTAAAGTTGCAACAACCAGATGGGAATTTTGCAACGACCGGTTTAGGAAGGGTGAGAAGGAGCTACTATGCGAGATTCGGCGTAAGAAAACTTGGGTCAGCAAGAGACAACCCACCATTATTGCACCACCAATTCAAGCCACACCTCAAGATTCAGATGAAGATCAAAGGTCCTTAATATTGGCCTCTTCGCCTTCGGCTTACGCTCTTCTCGTGGACGAAAACAAGCGACTCAAGAAGGAGAATGGAGTGTTGAGCTCGGAGCTCACAACCATGAAGAGGAAGTGCAGGGAATTGCTTGATTTGGTGGCCAAGTATTCATGTGCAAAGGGAGAAGGGGTGGATGAGAGACCAATGTTGTTTCAGGTGAGATTGGAAGAAGTTCAAGGAGAAAGGGAGATGATGATGATGATGAAGAAGAAGAAGAAGAGAGATGAAATAAGTGAAAGTACAAGCATTTTGTTGTCTCAACTATGA 720 0.4472 MEEESDKGLLECVRKFSTPPFLLKTYMLVEDPATNDVVSWNGDGTTFVVLQPVEFARDLLPTLFKHNNFSSFVRQLNTYGFRKVATTRWEFCNDRFRKGEKELLCEIRRKKTWVSKRQPTIIAPPIQATPQDSDEDQRSLILASSPSAYALLVDENKRLKKENGVLSSELTTMKRKCRELLDLVAKYSCAKGEGVDERPMLFQVRLEEVQGEREMMMMMKKKKKRDEISESTSILLSQL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02746 239 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 225 IPR027725 -
Pumo3g02746 239 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Pumo3g02746 239 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g02746 239 Gene3D - 13 111 IPR036388 -
Pumo3g02746 239 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g02746 239 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g02746 239 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g02746 239 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g02746 239 FunFam Heat stress transcription factor B-4 13 111 - -
Pumo3g02746 239 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02746 Pumo-Chr3 45502652 45507484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02746 19 187 HSF AT2G41690 55.000 1.71e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo3g02746 HSF_DNA-bind 1.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02746 K09419 - gmx:100802739 315.464