Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02743 ATGGCTTCGTCTTCCTCCGATCCTGGCAAGTCCGAAGCTGGTGGCGGCGGTTCGGAGACTCCCGAAGCAACCGCGGCGAACGAGGAACAGTTACGGCTGATGAAGAAGGCGAAGAAAGAGAGAGTGTGCACTGCGAAAGAGCGAATCAGCAAAATGCCTCCTTGTGCTGCGGGCAAACGCAGCTCCATCTACCGCGGCGTCACCAGGCATAGATGGACTGGTCGTTATGAAGCACATCTTTGGGACAAAAGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCATATGATGATGAAGAGGCAGCAGCTAGAGCATATGACCTTGCTGCTCTGAAATATTGGGGTCCAAGTGCTCTCATAAACTTTCCAGTGACTGATTATGCAAGAGATCTAGAAGAAATGCAGAATGTATCGAGAGAGGAATACCTAGCATCTTTACGCCGGAAGAGCAGTGGTTTTTCAAGAGGACTATCCAAATACCGAGGACTCTCCAGTCGATGGGATCCAACATATGGTCGTATGGCTGGATCTGACCACTTCAATAGTATATATTATGGTGAAGATTCAGCAGCAGAAACCAAATATCTAAGTAGTCTCTGCATAGAAAGAAAGATTGATTTAACAAGTTACATCAAATGGTGGGGGTCAAATAAAAGTCAACAACCTGATTCTGGAGTAAGATTTTCAGATGTTAAAAAGCATGGTTTTGCTGGAGATATTTGCATCGAACTCAAAACATTGGAACAAAAAGCCCATCTTTCAGAACCATACCAGTTGCCAGTGTTAGGCATGCCCCATGAAAGGAGAAAACATGAATGTTCTTCTGTCTCTGCTTTAAGTATCTTGTTACAATCAGCTGCTTACAAGAACTTGCAACAGAAAGCATCAAAGAGACAGGAAAATAGCAATGATAATGATGAGAATGAAAATAAAAATACCATCAATAAGTTGGACCATGGCAAGGCAGCAGAGAAATCATCGAATAATGATGGTGGCAATGAAGGACTTGACATTGCAATGGGAATGAGTGGATCACTGTCTCTTCAAAGAAATGTTTACCCACTGACATCGTTATTATCTGCTCCACTTTTGACAGCCTACAATACTGTTGATCCATCGGTAGATTCTGTTCTCTGGACGGCACAGGTTCCTATACTTTCTGCTGGCCCTTCCGGTGTAGCTGAGGTTTCGAAGACAGAGACCAGTTCAACGTACACGATTTTTCAGCCAGAGGAGTGA 1257 0.4399 MASSSSDPGKSEAGGGGSETPEATAANEEQLRLMKKAKKERVCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPSALINFPVTDYARDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWDPTYGRMAGSDHFNSIYYGEDSAAETKYLSSLCIERKIDLTSYIKWWGSNKSQQPDSGVRFSDVKKHGFAGDICIELKTLEQKAHLSEPYQLPVLGMPHERRKHECSSVSALSILLQSAAYKNLQQKASKRQENSNDNDENENKNTINKLDHGKAAEKSSNNDGGNEGLDIAMGMSGSLSLQRNVYPLTSLLSAPLLTAYNTVDPSVDSVLWTAQVPILSAGPSGVAEVSKTETSSTYTIFQPEE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02743 418 Gene3D AP2/ERF domain 63 131 IPR036955 GO:0003700|GO:0006355
Pumo3g02743 418 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Pumo3g02743 418 PRINTS Ethylene responsive element binding protein signature 111 131 IPR001471 GO:0003700|GO:0006355
Pumo3g02743 418 ProSiteProfiles AP2/ERF domain profile. 63 129 IPR001471 GO:0003700|GO:0006355
Pumo3g02743 418 MobiDBLite consensus disorder prediction 298 342 - -
Pumo3g02743 418 MobiDBLite consensus disorder prediction 305 331 - -
Pumo3g02743 418 CDD AP2 62 131 IPR001471 GO:0003700|GO:0006355
Pumo3g02743 418 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 25 319 - -
Pumo3g02743 418 MobiDBLite consensus disorder prediction 1 29 - -
Pumo3g02743 418 Pfam AP2 domain 63 121 IPR001471 GO:0003700|GO:0006355
Pumo3g02743 418 SMART rav1_2 63 135 IPR001471 GO:0003700|GO:0006355
Pumo3g02743 418 SUPERFAMILY DNA-binding domain 62 130 IPR016177 GO:0003677
Pumo3g02743 418 FunFam AP2-like ethylene-responsive transcription factor 62 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02743 Pumo-Chr3 45427289 45433236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02743 24 416 AP2-EREBP Transcription Factor Family AT2G41710 61.369 2.33e-151 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo3g02743 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02743 K09285 - gmx:100795084 701.434