Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02730 ATGTGTTCTTGCACCCCAACCTTGACTCATGCATTTGGTTCTTGTTCTTCCACTAAGAAGAGGAAGCTTTGCAACAAAGCCTATGTTGTTGCAAGAAAGAAGTTCAAGAATGATGATGAGCATTGGAAGATCAAGAAAGTGTTGAAAGAAAGTGATGTTGGAAACATGAGTAGGCTCATGGTTGGGAGAGATAAGGCAGATGACTTTGTGCTGCCTGTGTTGGGGGTTGATGCTGATGAGGTTGACAGAGGAGTTGCTGTCAAGATTTGGGATGTGGACACAAAGTCCATGCACTCTCTTGTTTTCAAGAGATGGGTTTCTTCAAGGAGTTATGTCTTCATTGGCAATTGGGGTACAGATTTTGTTGCAAGAAGAGGCTTAAAGAAAGGAGATGAAATTGGTCTTCAATGGAATCCGTTCAACAATGCCTTTAACTTCTCTGTTCTTCAAGTCAATTACATGGGATAG 468 0.4167 MCSCTPTLTHAFGSCSSTKKRKLCNKAYVVARKKFKNDDEHWKIKKVLKESDVGNMSRLMVGRDKADDFVLPVLGVDADEVDRGVAVKIWDVDTKSMHSLVFKRWVSSRSYVFIGNWGTDFVARRGLKKGDEIGLQWNPFNNAFNFSVLQVNYMG 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02730 155 SUPERFAMILY DNA-binding pseudobarrel domain 39 141 IPR015300 -
Pumo3g02730 155 CDD B3_DNA 42 149 IPR003340 GO:0003677
Pumo3g02730 155 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 22 150 - -
Pumo3g02730 155 Gene3D - 32 150 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02730 Pumo-Chr3 44719900 44720367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02730 6 133 B3 DNA Binding Superfamily AT3G24650 27.907 6.35e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02730 - - gmx:102663812 234.958