Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02709 ATGACAGAAAGGATATCTATTCCCCTGGAAAAGCCATGCATCATTTTAGAAGGAGAGGGTAGCCCGAACACAATCATAAGTTTTTGGGACCACCAAGGAATAAGTTATCAAGACACTTTATTAGATGCAAGGGGACGCCATTACTTTAAAGATTGCTACATTCAAGGTGAAGTGGACTTTATTTTTGGTGCTGCACAATCTTACTATGAGAATTCTGTGATCAACGCTGTAGGGAGATATAAATCTTTACCAGGTTTTGTCACAGCTCAAGGACGAAATTCATCAGATGACCTAGGTGGTTTTGTATTTAAAGGGGGTTCCCTTACAGGGAATTTTATGGTGAATTTAGGAAGAGCATGGCGTGCTTACTCTAGAGTTATATTTCATGGAACATATTTTTCTTCCATTGTAACTCCTCAAGGATGGAATGCTTGGAATTACATTGGTCAAGAGTAA 456 0.3882 MTERISIPLEKPCIILEGEGSPNTIISFWDHQGISYQDTLLDARGRHYFKDCYIQGEVDFIFGAAQSYYENSVINAVGRYKSLPGFVTAQGRNSSDDLGGFVFKGGSLTGNFMVNLGRAWRAYSRVIFHGTYFSSIVTPQGWNAWNYIGQE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02709 151 Gene3D - 27 151 IPR012334 -
Pumo3g02709 151 SUPERFAMILY Pectin lyase-like 2 146 IPR011050 -
Pumo3g02709 151 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 28 147 - -
Pumo3g02709 151 Pfam Pectinesterase 35 146 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02709 Pumo-Chr3 44050752 44051994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02709 11 151 Carbohydrate Esterase AT2G19150 46.528 1.23e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02709 - - pvu:PHAVU_008G271600g 192.2