Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02698 ATGGATCGCAAAACCAAACGCAACCGCTCGTTCTCCTACTCCACTCTCTTCAACCTCGAGCCTTTGAAGAACTTTCAACTTCCACATGAAGATGATGATGATGATTTTGATTATTATGGGAATAATAGTCAGGATGATGATGAGAGCAGAAATAGCCAAGTTGGTAGGGCAAATCACAGTCATGGAAATGTGCACGCAAGGGAGGGGAATTTGTTGAGGAAGAGGGCGAGGTCTCAGAACAGTGATACTGATGATGAGGAAAAGGGAAGATATTATGGGACATACATGACACAGGAACGGTACCGATCAATGCTTGGAGACCATGTTCAGAAATACAAAAGGAGGCGTAAGGATGCCGTGTCTAATCCTGCTCGCAATCCGGTTGCTGTTCCTCTTGTCAAAAGTAACAATGGCTTAAAAGTTCGAAAGTCAGGGAATGATTACAGGGGAGCATCACATGCTGCAGAAAGTGCATCTCAAAGGCTTCATGATTCGAGTAATCAGAAACCAGGAAACTACAGTCATGCAGATTTCAAGCAGCGATATGGCACCAATAGGATTATGTATGAACCTGCTTTTTTGGACATTGGGGATGGTGTCTCTTACAAGATTCCTCCAATTTATGATAAGTTGGCCCCAATGCTGAACCTTCCAAACTTCTCGGATATCCATGTGGACGAATTTTACTTAAAGAGTACCTTGGATTTGGGGTCCTTGGCTGCTATGAGGGCTGCTGATAAAAGGTGTGGGACTAGAAACCAAGCAGGCATGGGGGAACCCCTATCCGAATATGAATCACTTCAGGCAAGAATAAAGGCCATGCCAGCTTCTAATTCACCTCATAAATTCAGTCTGAAAGTGTCTGATGTTGGTTTGAATTCATCCATTCCGGAGGGTGCCGCTGGAAGCATAAAGAGATATATTTTATCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAGGGTGACACATACGAGATAATTGAGCGAAGCCTACCAAAGAAGCATAAGGTAAAGAAAGATCCTGCTTTGATAGAGAAGGAAGAAATGGATAGAATTGGAAAGATTTGGATAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTACTTTTCATCGAAAGCAACTCATTGATGCCAAGAGGTTCTCAGACTACTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCACTCAAATGGATTAAGGGTGCTAACGTTCGCACCCGGAAACTAGCTAGAGACATGTTGCTGTTCTGGAAACGAGTAGATAAGGAGATGGCCGAAGTCAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCATGAACAAGAGCTTCGAGAAGCTAAGAGGCAGCAGCAAAGGCTTAATTTTCTAATACAACAAACTGAGCTGTACAGCCACTTTATGCAGAACAAGTCAAGTGCACACTCTTCAGATGCTTTACCCTTGGTAGATGAAGAAACAAATGATCAAGATGCACTGTTTGACTCTTCAGATGCTGAGCATAATGAGGAGGAAGATCCGGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAACAGAGAATGTTGACTAATGCTTTTGACAGTGCATGCTTGAGGTTGCGCCAGGTGGATGAAACTGATTCACTTACACAGCAAGTAGCTGGAGGAAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGTATCCACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTGAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTATTTTTAGCCCATTTGGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAACGCTTCTGCCCTGAGCTTAAAAGACTTCCATATTGGGGAGGGCTTTCAGAGCGGGCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAGGCTAAATTCCACATTCTTATCACAAGCTATCAGCTATTAGTAACTGATGAGAAGTATTTTCGCCGTGTGAAATGGCAGTACATGGTCTTAGATGAAGCCCAGGCAATCAAAAGTTCAACCAGTATAAGGTGGAAGACACTTCTCAGCTTTAATTGTCGGAATCGCCTCCTGCTGACTGGTACACCTGTTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTTATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTCTCAAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAACGAGCACCAGCTTAATAGATTGCATTCAATACTAAAACCTTTCATGCTGCGACGTGTTAAAAAAGATGTAATTTCTGAGCTAACTAAGAAAACTGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCTATCAAGAACAAGATATCTCTTGCCGGGTTGTTTGATAGTAATCGTGGGCAGCTCAATGACAAGAAAGTTATGAGTTTAATGAATATCGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAATGAGGGAAGCACGTACTTTTACTTTGGAGAAATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGGATATATACTATCCTGGTGGGCATAACCCGATATCATATGAGATACCAAAACTTGTCTATCAAGAGATTATGCAAAGTTCTGAAACTTTCAGTTCGGCTGTTGATCATGGTATCTGCAGGGAATCATTTCAGAAATATTTTAATATTTTTAGACCTGAAAATGTTCATCGATCTATCTTCTCAGAAGATATTATTGTTAAAAGTGGAAACTTTGGTTTTACCCATCTGATGGATTTGTCTCCCCAAGAGGTGGCATTTATGGCCACGGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGATGGGAACAGAAGTTCCTTGATGAAGTTTTAGACTTTCTTATAGAGACCACAATAGGTGATCCTGAATGTAGTTACCTTGAGAAAGGTAAAGTGAGAGCTGTTTCACGAATGTTATTGTTGCCATCAAGATATGAGACCAAGTTTCTTCAGAAAAAGTTTGCAACTGGACCTGCCAATGCTCTTTTTGAGGCCTTGGTGGTCTCACATCAGGATAGGCTTTTATCAAATGCAAGGCTTCTTCACTCGGCATACACATATATCCCATCGACTAGAGCTCCCCCAATTCGTGCTCACTGCTCAGACAGAAACTTCTCCTATAAAATGTTTGAAGAATTACATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCGCGTACATCTGAATGTAATGGGCCTAGAAAGCCTGATAATCCTCCTCATTTAATTCAAGAGATCGATTCTGAGTTACCCATTTCACGGCCTGCACTTCAGTTAACGCATAGTATTTTTGGCTCTTCACCACCTGTGCGGAATTTTGATCCAGCAAAGTTGCTCACTGACTCTAAGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGGGCAGAAAATCATCGTGTTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAGATATTTTAGACTTGATGGGTCATCTACTATTCAGGATCGCAGAGACATGGTCAGAGACTTCCAGCACAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTACAGGCGATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGTCTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAGAAAAGTACCGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATATTTTAGCTCCCGAGGATGTTGTATCTTTGCTTCTTGATGATGTTCAATTGCAACAGAAATTGAAGGAAATTCCTCTCCAGGTAAAGGGTAAGCAAAAGAGAAAACCTATGAAGGCTATACGGATAAATGAGGAAGGCGATGCATCTCTGGAGGATCTAACAAACTGTGTAGCCCAGGGAACTGCAGATTATGATATTTCCATGGATCCGGAGGGACCAAAGTCCAGTAATAAAAAGACAAAAACAGCTTCTGACAAGCAAAAACCGAGCCCAAAGAATTCTCAGAAGAAGATGAAAGGCAGTATGTCTAATAGATAA 4413 0.4136 MDRKTKRNRSFSYSTLFNLEPLKNFQLPHEDDDDDFDYYGNNSQDDDESRNSQVGRANHSHGNVHAREGNLLRKRARSQNSDTDDEEKGRYYGTYMTQERYRSMLGDHVQKYKRRRKDAVSNPARNPVAVPLVKSNNGLKVRKSGNDYRGASHAAESASQRLHDSSNQKPGNYSHADFKQRYGTNRIMYEPAFLDIGDGVSYKIPPIYDKLAPMLNLPNFSDIHVDEFYLKSTLDLGSLAAMRAADKRCGTRNQAGMGEPLSEYESLQARIKAMPASNSPHKFSLKVSDVGLNSSIPEGAAGSIKRYILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKHKVKKDPALIEKEEMDRIGKIWINIVRRDIPKHHRNFTTFHRKQLIDAKRFSDYCQREVKMKVSRSLKWIKGANVRTRKLARDMLLFWKRVDKEMAEVRKREEKEAAEALRHEQELREAKRQQQRLNFLIQQTELYSHFMQNKSSAHSSDALPLVDEETNDQDALFDSSDAEHNEEEDPEEAELKKEALKAAQEAVSKQRMLTNAFDSACLRLRQVDETDSLTQQVAGGSNIDLQTPSTMPVVSTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERAVLRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTKKTEVMVHCKLSSRQQAFYQAIKNKISLAGLFDSNRGQLNDKKVMSLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNSLPPPPFGELEDIYYPGGHNPISYEIPKLVYQEIMQSSETFSSAVDHGICRESFQKYFNIFRPENVHRSIFSEDIIVKSGNFGFTHLMDLSPQEVAFMATGSFMERLLFSMMRWEQKFLDEVLDFLIETTIGDPECSYLEKGKVRAVSRMLLLPSRYETKFLQKKFATGPANALFEALVVSHQDRLLSNARLLHSAYTYIPSTRAPPIRAHCSDRNFSYKMFEELHDPWVKRLFVGFARTSECNGPRKPDNPPHLIQEIDSELPISRPALQLTHSIFGSSPPVRNFDPAKLLTDSKKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDILAPEDVVSLLLDDVQLQQKLKEIPLQVKGKQKRKPMKAIRINEEGDASLEDLTNCVAQGTADYDISMDPEGPKSSNKKTKTASDKQKPSPKNSQKKMKGSMSNR 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02698 1470 MobiDBLite consensus disorder prediction 61 92 - -
Pumo3g02698 1470 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 607 778 IPR014001 -
Pumo3g02698 1470 SMART ultradead3 591 786 IPR014001 -
Pumo3g02698 1470 Coils Coil 432 471 - -
Pumo3g02698 1470 MobiDBLite consensus disorder prediction 1437 1457 - -
Pumo3g02698 1470 FunFam DNA helicase INO80-like protein 1181 1432 - -
Pumo3g02698 1470 Pfam DNA-binding domain 356 484 IPR020838 GO:0003677
Pumo3g02698 1470 SMART helicmild6 1239 1322 IPR001650 -
Pumo3g02698 1470 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1213 1363 IPR001650 -
Pumo3g02698 1470 Gene3D - 1160 1417 IPR027417 -
Pumo3g02698 1470 MobiDBLite consensus disorder prediction 508 527 - -
Pumo3g02698 1470 MobiDBLite consensus disorder prediction 23 92 - -
Pumo3g02698 1470 MobiDBLite consensus disorder prediction 1426 1470 - -
Pumo3g02698 1470 Pfam Helicase conserved C-terminal domain 1212 1322 IPR001650 -
Pumo3g02698 1470 MobiDBLite consensus disorder prediction 158 174 - -
Pumo3g02698 1470 CDD SF2_C_SNF 1201 1333 - -
Pumo3g02698 1470 PANTHER HELICASE SRCAP-RELATED 75 533 - -
Pumo3g02698 1470 Gene3D - 833 902 IPR027417 -
Pumo3g02698 1470 ProSiteProfiles DBINO domain profile. 360 485 IPR020838 GO:0003677
Pumo3g02698 1470 FunFam Putative DNA helicase INO80 567 845 - -
Pumo3g02698 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 1386 IPR027417 -
Pumo3g02698 1470 Gene3D - 590 832 IPR038718 -
Pumo3g02698 1470 MobiDBLite consensus disorder prediction 138 176 - -
Pumo3g02698 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 578 823 IPR027417 -
Pumo3g02698 1470 Pfam SNF2-related domain 610 897 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02698 Pumo-Chr3 43396038 43414410 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02698 648 896 RAD5 or RAD16-like Gene Family AT1G61140 23.548 2.84e-10 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo3g02698 SNF2_N 4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02698 K11665 - gmx:100796167 2628.2