Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02688 ATGGAAGTAGACAAGGAAAGTACCACATCAACTATTACTGCAGAACCCTCTGTACCTGCCTCTGACGGTCAAGATCCTGTTTCTTCTGTTAATGCATCTCTACCCCATCCAATACAACCTGTTATTCCACCGGTTATTGCACCTTCTGCTGTACCTCCTTTAGCTCCAATTCCTGCAATTCCTCCCCCTCGCCCGCTGGCACCGCTTCCAGTTCGGCCACCAGTCATTAGGCCACCTGTGCGACAAAATGGCGAGGTTGGATCAAGTGACTCTGATTCGGACAATGATGACTCAAATGCAAGAATTAACCAGGGGGCCGGAGAGTATGAGATATCTGAAGAGAGTAGGCTGGTGAGAGAGCGGCAGGAAAAGGCAATGCAGGAACTCATGATGAAGAGGCGTGCTGCTGCTCTTGCTGTTCCTACGAATGATATGGCCGTGCGAGCTCGGCTTCGACATCTTGGCGAACCGATAACTCTGTTTGGTGAGAGGGAGATGGAGAGACGGGACAGGTTGCGGATGATTATGGCAAAGTTGGATGCAGACGGTCAGCTGGAGAAGCTGATGAAAGCTCATGAGGAAGAAGAGGCTGCGGCTTCTGCTCCGAAAGATGAGGCTGAGGAAGAACTGCTGTATCCTTTTTACACTGAAGGGTCAAAGGCTCTCCTGGATGCAAGAATATATATTGCTAAATATTCTTTGTCAAGGGCAGCATTACGGATTCAACGTGCACAGAGAAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGATGGATTGGGCATTGAAGCAGGCTGGGAGTTTGAGTCTTGAATTCAGTGAAATTGGAGATGATCGCCCGCTTTCTGGTTGCTCCTTCTCAAGGGATGGAAAATGGCTTGCTACCTGTTCTCTGACTGGAGCTTCCAAGTTGTGGAGCATGCCCAAAATAAAAAAGCATTCCACCTTTAAAGGGCACACAGAACGTGCTACTGATGTTACTTATTCTCCTATTCATGATCATCTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATGATCAAGGATCACTTTTGAAGACATTCGAGGGTCATCTAGACCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGCACTGCTAGCTTTGATAAGACATGGAGATTATGGGACATAGAAACAGGAGACGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGCTTTCCACCATGATGGATCATTAGCTGCATCTTGTGGACTAGACTCTCTGGCTCGTGTTTGGGACCTCCGAACTGGAAAAAGTATTCTTGCACTGGAAGGTCATGTCAAGCCGGTTCTTGGCATCAGTTTTTCACCTAACGGATATCATCTAGCCACGGGTGGTGAAGACAACACTTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACTATTCCTGCTCACTCTAATTTAATATCACAAGTTAAATTTGAGCCACAAGAAGGTTACTTTTTGGTAACTGCCTCATATGACATGACGGCTAAGGTATGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACTTCTGTGGATGTTCTCGGAGATGGCAGGTATATTGCAACTGTCTCCCATGATCGCACCATAAAGCTGTGGTCCAGTAGTACGATTGATGAACAAGCTATGGATGTTGACTAA 1716 0.4662 MEVDKESTTSTITAEPSVPASDGQDPVSSVNASLPHPIQPVIPPVIAPSAVPPLAPIPAIPPPRPLAPLPVRPPVIRPPVRQNGEVGSSDSDSDNDDSNARINQGAGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKAHEEEEAAASAPKDEAEEELLYPFYTEGSKALLDARIYIAKYSLSRAALRIQRAQRRRDDPDEDMDAEMDWALKQAGSLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWSMPKIKKHSTFKGHTERATDVTYSPIHDHLATASADRTAKYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGDELLLQEGHSRSVYGLAFHHDGSLAASCGLDSLARVWDLRTGKSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGRYIATVSHDRTIKLWSSSTIDEQAMDVD 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02688 571 ProSitePatterns Trp-Asp (WD) repeats signature. 419 433 IPR019775 -
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 441 IPR001680 GO:0005515
Pumo3g02688 571 Pfam WD domain, G-beta repeat 352 390 IPR001680 GO:0005515
Pumo3g02688 571 Pfam WD domain, G-beta repeat 315 349 IPR001680 GO:0005515
Pumo3g02688 571 Pfam WD domain, G-beta repeat 522 559 IPR001680 GO:0005515
Pumo3g02688 571 Pfam WD domain, G-beta repeat 439 474 IPR001680 GO:0005515
Pumo3g02688 571 Pfam WD domain, G-beta repeat 401 432 IPR001680 GO:0005515
Pumo3g02688 571 Gene3D - 117 202 IPR036285 -
Pumo3g02688 571 SMART pr04_2 142 195 IPR014906 -
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 442 483 IPR001680 GO:0005515
Pumo3g02688 571 MobiDBLite consensus disorder prediction 37 77 - -
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 358 399 IPR001680 GO:0005515
Pumo3g02688 571 MobiDBLite consensus disorder prediction 1 117 - -
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 527 559 - -
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 349 - -
Pumo3g02688 571 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 257 441 - -
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 437 - -
Pumo3g02688 571 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 485 561 - -
Pumo3g02688 571 Gene3D - 443 568 IPR015943 GO:0005515
Pumo3g02688 571 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 116 187 - -
Pumo3g02688 571 CDD WD40 281 559 - -
Pumo3g02688 571 SUPERFAMILY PRP4-like 125 180 IPR036285 -
Pumo3g02688 571 SMART WD40_4 266 307 IPR001680 GO:0005515
Pumo3g02688 571 SMART WD40_4 351 390 IPR001680 GO:0005515
Pumo3g02688 571 SMART WD40_4 393 432 IPR001680 GO:0005515
Pumo3g02688 571 SMART WD40_4 435 474 IPR001680 GO:0005515
Pumo3g02688 571 SMART WD40_4 310 349 IPR001680 GO:0005515
Pumo3g02688 571 SMART WD40_4 520 559 IPR001680 GO:0005515
Pumo3g02688 571 SMART WD40_4 477 517 IPR001680 GO:0005515
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 484 517 - -
Pumo3g02688 571 Pfam pre-mRNA processing factor 4 (PRP4) like 147 173 IPR014906 -
Pumo3g02688 571 ProSitePatterns Trp-Asp (WD) repeats signature. 461 475 IPR019775 -
Pumo3g02688 571 Gene3D - 261 442 IPR015943 GO:0005515
Pumo3g02688 571 SUPERFAMILY WD40 repeat-like 273 558 IPR036322 GO:0005515
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 442 476 - -
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 358 394 - -
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 527 568 IPR001680 GO:0005515
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 484 526 IPR001680 GO:0005515
Pumo3g02688 571 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 349 IPR001680 GO:0005515
Pumo3g02688 571 PANTHER WD40 REPEAT PROTEIN 89 560 - -
Pumo3g02688 571 PRINTS G protein beta WD-40 repeat signature 461 475 IPR020472 -
Pumo3g02688 571 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Pumo3g02688 571 PRINTS G protein beta WD-40 repeat signature 377 391 IPR020472 -
Pumo3g02688 571 ProSitePatterns Trp-Asp (WD) repeats signature. 377 391 IPR019775 -
Pumo3g02688 571 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02688 Pumo-Chr3 42900009 42907694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02688 362 558 U-box Gene Family AT2G33340 22.624 3.11e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02688 K12662 - gmx:100788948 936.791