Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02676 ATGTCCCTGGAAGAGTCTCTAAGATCTCTCTCCCTGGACTACCTCAACCTCCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTCGAGGGCCGCCTGGTCCACGCGCACCGCTGCATCTTGGCCGCGCGCAGCCTCTTCTTCCGGAAATTCTTCTATGGACCGGACCCGCCTCCGGGACTCGACCCCGCCGGCGCGTCGCGATCGAGCGCCGGCGCGGCGGCGCGTCCCTCCGGCGTGATCCCGGTGAACTCGGTGGGGTACGAGGTGTTCCTGCTGCTGCTGCAGTTCCTGTACAGCGGACAAGTCTCCATCGTGCCGCAGAAGCACGAGGCGAGGCCCAATTGCGGCGAGCGAGGGTGCTGGCACACGCATTGCACCTCGGCCGTTGATCTTGCCCTCGACACCCTCGCCGCCGCCAGATACTTTGGCATTGAACAGCTCGCATTGCTCACTCAGAAACAACTAGCGAGCATGGTAGAGAAAGCCTCAATCGACGATGTGATGAAAGTGCTGATAGCATCTCGGAAGCAGGAAATGCAGCAGCTGTGGAGCACGTGCTCCCACCTGGTGGCGAAGTCGGGTCTCCCTCCGGAGGTGCTGGCAAAGCACCTCCCCATCGACGTGGTGGCGAAGATCGAAGAGCTCCGTCTCAAATCCTCCCTCGCCCGCCGCTCTCTACTTCCCGGCCTCCTCCACCACGACCTCGCCCCTGACATGGAGGACCAGAAGATCCGCCGAATGCGCCGCGCCCTCGACTCCTCTGACGTCGAACTCGTCAAGCTCATGGTCATGGGGGAGGGGCTCAACCTCGACGAGGCGCTCGCGCTGCACTACGCGGTGGAAAATTGCAGCAGGGAGGTGGTTAAGGCTCTGCTCGAGCTAGGCGCGGCGGACGTCAACTTCCCCGCCGGCCCCGCTGGGAAGACGCCCCTGCACGTGGCGGCAGAGATGGTGTCGCCGGAAATGGTGGCGGTGCTGCTGGACCACCACGCGGACCCCAACGTCCGCACCGTGGAGGGCGTGACTCCTTTGGACATCCTTAGAACCCTAACGTCGGACTTCCTCTTCAAAGGGGCTGTCCCTGGACTCACCCACATTGAGCCCAACAAGCTCAGGCTGTGCTTGGAGCTCGTGCAATCCGCGGCTCTTGTTTTGTCCCGTGAAGAAGGGAACAACAACAATGATAACAATAACGACAATAACAACAACACTTCTGCTTCTGCTACTTCCATTTATCCGCCAATGAGCGAAGACCATAGCAGCAGCCGCAATTTGGACTCCAGGTTGGTGTATCTCAACCTCGGTGCGACGCCGCAAATAGGTGACGATGATAGCAGCAGCCAGAGGGAAGCCATGAACCGTCATGGCTCGCAAGGTGGTGGATGTGACCCATCAATGTACCATCACTCTCATGACTTCTAG 1431 0.6024 MSLEESLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFYGPDPPPGLDPAGASRSSAGAAARPSGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGIEQLALLTQKQLASMVEKASIDDVMKVLIASRKQEMQQLWSTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKSSLARRSLLPGLLHHDLAPDMEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPNVRTVEGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNNNNDNNNDNNNNTSASATSIYPPMSEDHSSSRNLDSRLVYLNLGATPQIGDDDSSSQREAMNRHGSQGGGCDPSMYHHSHDF 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02676 476 MobiDBLite consensus disorder prediction 392 426 - -
Pumo3g02676 476 SMART BTB_4 25 162 IPR000210 GO:0005515
Pumo3g02676 476 MobiDBLite consensus disorder prediction 442 457 - -
Pumo3g02676 476 Pfam BTB/POZ domain 16 114 IPR000210 GO:0005515
Pumo3g02676 476 SUPERFAMILY POZ domain 9 160 IPR011333 -
Pumo3g02676 476 Pfam Ankyrin repeats (3 copies) 257 339 IPR002110 GO:0005515
Pumo3g02676 476 Gene3D - 241 357 IPR036770 -
Pumo3g02676 476 MobiDBLite consensus disorder prediction 439 476 - -
Pumo3g02676 476 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 476 IPR044284 GO:0099402
Pumo3g02676 476 FunFam regulatory protein NPR5 isoform X2 240 357 - -
Pumo3g02676 476 FunFam regulatory protein NPR5 isoform X1 4 195 - -
Pumo3g02676 476 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
Pumo3g02676 476 CDD BTB_POZ_NPR_plant 8 162 - -
Pumo3g02676 476 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Pumo3g02676 476 SUPERFAMILY Ankyrin repeat 268 352 IPR036770 -
Pumo3g02676 476 Gene3D Potassium Channel Kv1.1; Chain A 3 195 IPR011333 -
Pumo3g02676 476 ProSiteProfiles Ankyrin repeat region circular profile. 309 339 - -
Pumo3g02676 476 Pfam Domain of unknown function (DUF3420) 197 251 IPR024228 -
Pumo3g02676 476 SMART ANK_2a 274 304 IPR002110 GO:0005515
Pumo3g02676 476 SMART ANK_2a 309 338 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02676 Pumo-Chr3 41967792 41972103 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pumo3g02676 BTB 2.1e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02676 K14508 - gmx:100811388 774.237