Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02669 ATGGTCAAGAAGCTTAACCACAATGCTAGTGAACGTGATCGCCGCAAGAAGATCAATTCGTTGTATTCTTCACTTCGTTCACTTCTTCCACTAACAGATCAAATGAAGTTGAGCATTCCAGCAACAATTTCACGAGTTCTAAAGTACATACCAGAGTTACAGCATCAGGTGGAAGGACTAACAAGGAAAAAGGAAGAGATTTTGTTGAGAATTTCTCGGCAAGGGAACACAGTGATCACAAAAGAAAATCGAAGGAATAAGATTAATGCTCATCACAACTCTGGTTTTGTTGTTTCAACAAGTAGGCTCAGTGAAAATGAGGCTGCCATTCAGATTTCATCTCACATTGCTCACAAGATTCCACTATCTGAGATCTTGTTGGGTTTGGAAAATTATGGCCTTGTATTGCTAAATGTTTCTTCCTCTGAGACCTTTGGAGGGAGGGTCTTCTACAACTTGCATTTCCAGGTGGACAAATTTCAGAGATTAGAATCTGAGATTATAAGTGAGAAGCTTTTGTCAATAATTGAAATTAAGGAGAGGGACCTAGTGAAATGA 558 0.3907 MVKKLNHNASERDRRKKINSLYSSLRSLLPLTDQMKLSIPATISRVLKYIPELQHQVEGLTRKKEEILLRISRQGNTVITKENRRNKINAHHNSGFVVSTSRLSENEAAIQISSHIAHKIPLSEILLGLENYGLVLLNVSSSETFGGRVFYNLHFQVDKFQRLESEIISEKLLSIIEIKERDLVK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02669 185 Pfam Helix-loop-helix DNA-binding domain 3 54 IPR011598 GO:0046983
Pumo3g02669 185 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 2 174 - -
Pumo3g02669 185 Gene3D - 1 81 IPR036638 GO:0046983
Pumo3g02669 185 FunFam Transcription factor ORG2 1 83 - -
Pumo3g02669 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 72 IPR036638 GO:0046983
Pumo3g02669 185 SMART finulus 8 59 IPR011598 GO:0046983
Pumo3g02669 185 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 2 53 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02669 Pumo-Chr3 41761312 41763267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02669 1 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 49.180 8.61e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02669 HLH 5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02669 - - gmx:100803424 211.846