Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02668 ATGATGAGAATGAATAAAGGGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGATATATTTGGCATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCATGGAGTTCAGGCTGAGGAGGGATGGGATTGCAGAGAGGTTGTTTTCTTGCAGATTGAGTCGATGTTTGGGATGTGAGAGGGTGGAGTTGGCTGTGTCAGTGGATGATGATGATGGTGGTGAAGGTTGTGGTGGTGGTGGTTGCAAGAGTGGCCTTGATGGGGATGGTGCCGAGTTTGAGTTCGAAGCGGGCGCGAGTAAAGAGAGCAAGGTCAATAGTGCCGGAGACGTTCCTGGAGAGATGAACACGAACCAACTTAGCAATTACAGCTATGGGGATGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAATATGTTGAGGAGGTGTTCAGGATCAAGGATGTTTTGCTTAACTATGAAGAAGAGTCTGATTCAGTGTTGTTTGATTCATTGAGGAGGCTTCAGCTGATGGAACTCACAGTGGATCTTCTGAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGAAAGCATGGACTAAGGGACATTTGTCAACTTGCCCGGACTCTTATTGATGGCTGGAAACATATGGTGGATGACTGGGTCAAGGATACCACAGCTATTGCAGGTTCAGAAGGAACTCCAGATTCATTAAATCCATCTGTTGTTGATGATGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGCGCTTTATTTGCAGCTCCAACTGGTTCGATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACACAGTGGGGAATTCACCAAGAACCGTGAACATGGAAGAAGACCATCTCTGAACAGTCAAAATACAGCAAAGAGGAAACCTCAGGCATCAAATGAGGCAAACATCATTGCCAAGGACAGTAAGGAGGGTCAGCAAGCAAAGAAAAACGAGGCTGCTGTGAGGCCAAATAAACCAGTAATCGCTGATTCTGGCCCTGGCAGGCCACCAAAATCAACCATGCAGAAGAAAGGCAATATTGAGCCGAAGATGCAACAAAATATAGTGAAGAGTGCTATCCCAAAAAATCCTCACGTTCGTCAGCTAGATAAACTCAAGTGTTCAGACGATGCTGCTGTGAAGTTAGAAGCCACTAAGAGGAAACTTCAGGAGCGTTATCAACAAGCTGAAAATGCTAAGAGGCAGCGGACGGTACAGGTTATGGAGTTGCATGACCTCCCAAAGCAAGGGATTGGCCACCGAAATCCGCATGTCAAACCCAGAAATCACAAGAGGCAATGGGGTCAGGGACGAAGATAG 1371 0.4661 MMRMNKGSLDYWRNYFGAANSDIFGIIDHAIMVAASDCPMEFRLRRDGIAERLFSCRLSRCLGCERVELAVSVDDDDGGEGCGGGGCKSGLDGDGAEFEFEAGASKESKVNSAGDVPGEMNTNQLSNYSYGDAEALTDEIEEESQYVEEVFRIKDVLLNYEEESDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHGLRDICQLARTLIDGWKHMVDDWVKDTTAIAGSEGTPDSLNPSVVDDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPRHSGEFTKNREHGRRPSLNSQNTAKRKPQASNEANIIAKDSKEGQQAKKNEAAVRPNKPVIADSGPGRPPKSTMQKKGNIEPKMQQNIVKSAIPKNPHVRQLDKLKCSDDAAVKLEATKRKLQERYQQAENAKRQRTVQVMELHDLPKQGIGHRNPHVKPRNHKRQWGQGRR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02668 456 MobiDBLite consensus disorder prediction 438 456 - -
Pumo3g02668 456 CDD TFIIS_I 148 221 - -
Pumo3g02668 456 Pfam TFIIS helical bundle-like domain 172 220 IPR017923 -
Pumo3g02668 456 Coils Coil 389 423 - -
Pumo3g02668 456 MobiDBLite consensus disorder prediction 279 299 - -
Pumo3g02668 456 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 445 IPR044805 -
Pumo3g02668 456 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 231 IPR035441 -
Pumo3g02668 456 MobiDBLite consensus disorder prediction 300 323 - -
Pumo3g02668 456 MobiDBLite consensus disorder prediction 430 456 - -
Pumo3g02668 456 MobiDBLite consensus disorder prediction 230 366 - -
Pumo3g02668 456 SMART TFS2_5 147 222 IPR003617 GO:0005634
Pumo3g02668 456 ProSiteProfiles TFIIS N-terminal domain profile. 148 223 IPR017923 -
Pumo3g02668 456 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 145 234 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02668 Pumo-Chr3 41754156 41759448 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pumo3g02668 Med26 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02668 - - gmx:100775579 817.379