LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g02664	ATGGCGAAGCGCTTGGTTCCTCTGTTCAACCGTGTTTTGGTTGAGAAAATCGTCCCTCCTTCAAAAACCAACACTGGGATTCTGTTACCAGAATCGTCCACCAAGTTGAATTCTGGAAAAGTTATTGCTGTTGGTCCTGGAATTCACGATAAGGAAGGGAAGCTAATTCCTGTAGCTGTAAAGGAAGGTGACACTGTCCTTTTACCCGAATATGGAGGAACTGAGGTGAAGCTTCATGACAAAGAGTATCATCTATTTCGAGATGAAGATATGCTGGGGACCCTGCACGATTGA	294	0.4456	MAKRLVPLFNRVLVEKIVPPSKTNTGILLPESSTKLNSGKVIAVGPGIHDKEGKLIPVAVKEGDTVLLPEYGGTEVKLHDKEYHLFRDEDMLGTLHD	97

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g02664	97	Gene3D	GroES chaperonin	1	97	IPR037124	GO:0006457
	Pumo3g02664	97	PRINTS	10kDa chaperonin signature	82	95	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Pumo3g02664	97	PRINTS	10kDa chaperonin signature	61	73	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Pumo3g02664	97	PRINTS	10kDa chaperonin signature	5	20	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Pumo3g02664	97	PRINTS	10kDa chaperonin signature	26	47	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Pumo3g02664	97	Hamap	Co-chaperonin GroES [groES].	4	96	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Pumo3g02664	97	SMART	Cpn10_2	4	95	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Pumo3g02664	97	SUPERFAMILY	GroES-like	3	96	IPR011032	-
	Pumo3g02664	97	PANTHER	10 KDA HEAT SHOCK PROTEIN	1	94	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Pumo3g02664	97	FunFam	10 kDa chaperonin, mitochondrial	1	97	-	-
	Pumo3g02664	97	Pfam	Chaperonin 10 Kd subunit	5	94	IPR020818	GO:0005524\|GO:0006457\|GO:0044183
	Pumo3g02664	97	CDD	cpn10	4	95	IPR020818	GO:0005524\|GO:0006457\|GO:0044183

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g02664	Pumo-Chr3	41502576	41506452	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g02664	3	96	Calmodulin-binding Proteins	AT5G20720	40.625	4.44e-13	60.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g02664	K04078		-	gmx:100306384	178.718