Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02657 ATGCAGCATCAGATTGAGATGGAGAACTCTGAGCTCTTCCAATTCCTCACACACAGCAATGATTCTTTCTTCAACTCTGCATCATATGGCCTCCCTGCAGCACCTGCATCATCAACCATGCAACACAGCTTCTCTGGTTCCTTTTCCTATTACCCTTTGGAAGCATCTGATCATGCCCCATCTCATGAAGACAAAGCCCTTGCTGCTTTGAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAACTCCCACCTCGACAAGCTTCGCGCTCTTCTTCCTTGCAATTCCAAGACGGACAAGGCTTCACTTCTGGCCAAGGTGGTCCAGCGGGTGAAGGAGTTGAAGCAGCAAATATCCGAACTAACCGAATCCGAAGCGTTTCCTTCGGAGACCGACGAGATCTCCGTTCTGTCGTCCACCAGCAATGGTGACGACGGACGCCTCGTATTCAAGGCCTCTCTGTGCTGTGAGGACCGCTCCGACCTCATCCCGGACCTCATTGAGATCCTCAGGTCCCTGCACCTGAAAACGCTCAGAGCCGAAATGGTGACGCTCGGAGGAAGAACCCGCAACGTTCTCGTGGTGGCCACGGACAAAGACCACAGCGGCGAATCGATCCAGTTCCTGCAGAACTCGTTGAAGTCTCTCGTAGAACGCTCCAGCTCCAACGACAGATCCAAACGACGCCGTGTCTTGGACCGAAACTTCATCCCTTAA 726 0.5248 MQHQIEMENSELFQFLTHSNDSFFNSASYGLPAAPASSTMQHSFSGSFSYYPLEASDHAPSHEDKALAALRNHKEAEKRRRERINSHLDKLRALLPCNSKTDKASLLAKVVQRVKELKQQISELTESEAFPSETDEISVLSSTSNGDDGRLVFKASLCCEDRSDLIPDLIEILRSLHLKTLRAEMVTLGGRTRNVLVVATDKDHSGESIQFLQNSLKSLVERSSSNDRSKRRRVLDRNFIP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02657 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 128 IPR036638 GO:0046983
Pumo3g02657 241 Coils Coil 107 127 - -
Pumo3g02657 241 Gene3D - 63 129 IPR036638 GO:0046983
Pumo3g02657 241 CDD bHLH_AtAIG1_like 63 139 - -
Pumo3g02657 241 FunFam transcription factor bHLH30 63 126 - -
Pumo3g02657 241 Pfam Helix-loop-helix DNA-binding domain 72 117 IPR011598 GO:0046983
Pumo3g02657 241 Coils Coil 74 94 - -
Pumo3g02657 241 PANTHER TRANSCRIPTION FACTOR BHLH30 41 236 IPR045847 GO:0003700|GO:0006355
Pumo3g02657 241 SMART finulus 74 123 IPR011598 GO:0046983
Pumo3g02657 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02657 Pumo-Chr3 41286587 41289032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02657 50 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 69.832 2.64e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02657 HLH 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02657 - - gmx:100790009 403.29