LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g02653	ATGGGAATCTGTCATGGGAAACCCATTGAAACCCAACACAGTTCAAGAGAGAACCCATCAGCAGAATTCCCAACTGAAGAACTCCCAATCTCCACCACCACAACAAACCCCAAATCCTCAAAATTCCCATTCTACAGCCCGAGCCCTCTCCCCAGCTGGTTCAAAAACTCGCCTTCAAACTCAAACCCAAGCAGCGTCAGCTCCACGCCGTTAAGGATCTTCAAGCGCCCCTTCCCTCCTCCCTCGCCGGCCAAGCACATTCGCGCGCTGCTGGCTCGGCGCCACGGCTCGGTCAAGCCGAACGAAGCCTCCATACCCGAAGGGAGCGAGTGTGAGGTTGGGCTGGACAAGAGCTTCGGCTTCTCCAAGCAGTTCTCGGCCCATTACGAGCTCAGTGAAGAAGTGGGCCGGGGGCATTTTGGGTACACCTGCTCCGCCAAAGGCAAGAAGGGGGCCTTCAAGGGCGTGGATGTTGCTGTCAAAATGACCACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTGAAGATATTGCGGGCTCTAACAGGACATAAGAATCTGGTGCAATTCTATGAAGCTTATGAAGATGATGACAATGTTTATGTAGTTATGGAGTTATGCAAAGGAGGGGAATTGCTAGATAGGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAGGATGCCAGAGTAGTTATGATTCAAATATTAAGTGTGGTTGCTTTTTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGAATTTTCTTTTCACTTCTAAGGATGAAAATTCCACGTTGAAGGCCATTGATTTTGGATTGTCTGACTATGTAAAGCCAGATGAAAGGTTGAATGATATTGTGGGAAGTGCTTATTATGTAGCTCCAGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGTCGTCCCTTTTGGGCCCGGACAGAATCTGGTATATTTCGGGCTGTACTGAAGGCAGATCCTAGTTTTGACGAGGCTCCTTGGCCTTCTTTATCTGCCGATGCCAAAGATTTTGTAAAGAGGTTGTTGAATAAGGATTACCGTAAACGGTTGACTGCAGCTCAGGCCCTAAGTCATCCATGGCTGGTGAATCATCATGATGATATGAGGATACCTTTGGATATGATAATCCACAAGCTTGTTAAAGCTTACATTTGCTCATCTTCTTTACGCAAATCCGCTTTACGGGCTCTTGCAAAGACATTAACAGTAGCTCAGCTAGCTTATCTCAGAGATCAATTTACTCTGTTAGGGCCAAACAAAAGTGGATTAATCTCTATGCAGAACTTTAAGACGGCTGTTTTGAGGAGCTCCACAGATGCCTCAAAGGATTCACGGGTCTTAGATTATGTCAGTATGGTTAGTTCTATCCAATATAGGAAATTAGATTTTGAGGAGTTTTGTGCTGCTGCTATAAGTGTGCACCAACTTGAGGGAATGGAGACCTGGGAGCAACATGCGAGGCGTGCCTATGAGCTTTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAAGAACTTGCCTCGGAACTTGGGCTTAGTCCATCAGTACCTGTTCATGTAGTACTTCAGGATTGGATAAGACACTCGGACGGGAAGCTCAGTTTCTTGGGGTTTGTCAGGCTTCTGCATGGGGTTTCTTCCCGTGCATTTCAGAAGGCTTGA	1734	0.4608	MGICHGKPIETQHSSRENPSAEFPTEELPISTTTTNPKSSKFPFYSPSPLPSWFKNSPSNSNPSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVGLDKSFGFSKQFSAHYELSEEVGRGHFGYTCSAKGKKGAFKGVDVAVKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYVVMELCKGGELLDRILSRGGKYSEEDARVVMIQILSVVAFCHLQGVVHRDLKPENFLFTSKDENSTLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAKDFVKRLLNKDYRKRLTAAQALSHPWLVNHHDDMRIPLDMIIHKLVKAYICSSSLRKSALRALAKTLTVAQLAYLRDQFTLLGPNKSGLISMQNFKTAVLRSSTDASKDSRVLDYVSMVSSIQYRKLDFEEFCAAAISVHQLEGMETWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRAFQKA	577

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g02653	577	Pfam	Protein kinase domain	129	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g02653	577	Gene3D	Phosphorylase Kinase; domain 1	122	212	-	-
	Pumo3g02653	577	Gene3D	Transferase(Phosphotransferase) domain 1	213	405	-	-
	Pumo3g02653	577	CDD	STKc_CAMK	128	384	-	-
	Pumo3g02653	577	MobiDBLite	consensus disorder prediction	13	43	-	-
	Pumo3g02653	577	MobiDBLite	consensus disorder prediction	1	43	-	-
	Pumo3g02653	577	PANTHER	SERINE/THREONINE-PROTEIN KINASE	115	553	-	-
	Pumo3g02653	577	FunFam	CDPK-related kinase 1	397	569	-	-
	Pumo3g02653	577	ProSitePatterns	Protein kinases ATP-binding region signature.	135	161	IPR017441	GO:0005524
	Pumo3g02653	577	SUPERFAMILY	EF-hand	414	568	IPR011992	-
	Pumo3g02653	577	SMART	serkin_6	129	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g02653	577	FunFam	CDPK-related kinase 1	122	211	-	-
	Pumo3g02653	577	SUPERFAMILY	Protein kinase-like (PK-like)	122	419	IPR011009	-
	Pumo3g02653	577	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	247	259	IPR008271	GO:0004672\|GO:0006468
	Pumo3g02653	577	Gene3D	-	406	568	-	-
	Pumo3g02653	577	FunFam	Calcium-dependent protein kinase SK5	295	390	-	-
	Pumo3g02653	577	FunFam	CDPK-related kinase 3	121	287	-	-
	Pumo3g02653	577	ProSiteProfiles	Protein kinase domain profile.	129	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g02653	Pumo-Chr3	41182489	41189455	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g02653	1	575	EF-hand Containing Proteins	AT3G50530	66.667	0.0	838

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Pumo3g02653		Pkinase	4e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g02653	-		-	gmx:100796678	1046.57