Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02642 ATGTCAAACAGTAGGAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTCGGCTGGGACGGCGAGATGTGGTTTGTCCTAGCTGTAACGAGGGATTTGTTCATGAACTTAATGATATGGTGCATGTTAATCCTTTTGACTTATTTGGAATGGACAACAATGAAGAACGAGATCAAAGGCTTGGACTCATGGAAACATTCTCTGCCTTTATGAGGCATCAAATGGCAGATAGGGGCCAAAGCCGTGACATCAGGGCGCGAACAGATTCAAATCCTGAACACAGTGCAGGGTTTGCTCCTCTTTTGGTCTTTGGTGGTCAAATTCCTTTCAGATTGTCCGGACATGGTGGCTTTGAAGCTCTATTTAACGGGGCTCCAGGAATCGGTCTGACGCGAGGCAACACAGGTGATTATTTTATTGGTCCTGGACTAGAAGAACTGTTTGAACAGCTTTCAGCTAATAACAGGCAAGGTCCCCCGCCAGCATCGAGGTCATCAATCGATGCAATGCCTACCATCAAGATCACACAGAGGCATCTTCGTTCAGATTCACATTGTGCGGTGTGCAAAGATAAATTCGAGCTGGGGTCTGAAGCAAGACAAATGCCGTGCAACCATTTATATCATTCAGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCCGTTTGCCGCCAAGAACTGCCGCCACAAGGATTGAGTAGTAGTAGCCACGGCACAAATGGTAGAAGTAGAAGTGCAAGGGTAAGTAGTAGTGGTAGGGAGAGCCAGGGAAGGAGAAATCCATTTTCGTTTTTGTGGCCTTTTCGATCTTCGCATTCTAGCAGTAATGATGAAGCAACTGGAAGCAGCACACCAACACCAACACCAACTATCCCTGAGAATAGCCATCATCATCATGCAGGGTATTCTGGGTGGCCATTTGAATGA 936 0.4658 MSNSRNTHWCYSCRRPVRLGRRDVVCPSCNEGFVHELNDMVHVNPFDLFGMDNNEERDQRLGLMETFSAFMRHQMADRGQSRDIRARTDSNPEHSAGFAPLLVFGGQIPFRLSGHGGFEALFNGAPGIGLTRGNTGDYFIGPGLEELFEQLSANNRQGPPPASRSSIDAMPTIKITQRHLRSDSHCAVCKDKFELGSEARQMPCNHLYHSDCIVPWLVQHNSCPVCRQELPPQGLSSSSHGTNGRSRSARVSSSGRESQGRRNPFSFLWPFRSSHSSSNDEATGSSTPTPTPTIPENSHHHHAGYSGWPFE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02642 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Pumo3g02642 311 SUPERFAMILY RING/U-box 166 233 - -
Pumo3g02642 311 Pfam Ring finger domain 185 227 IPR001841 -
Pumo3g02642 311 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Pumo3g02642 311 MobiDBLite consensus disorder prediction 269 296 - -
Pumo3g02642 311 MobiDBLite consensus disorder prediction 231 311 - -
Pumo3g02642 311 CDD RING-H2_RNF126-like 186 227 - -
Pumo3g02642 311 MobiDBLite consensus disorder prediction 231 261 - -
Pumo3g02642 311 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Pumo3g02642 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 231 - -
Pumo3g02642 311 SMART ring_2 186 226 IPR001841 -
Pumo3g02642 311 FunFam E3 ubiquitin-protein ligase RING1-like 149 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02642 Pumo-Chr3 40779128 40781796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02642 121 231 C3H Transcription Factor Family AT5G01980 46.087 2.25e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02642 K11982 - gmx:100787523 604.364