Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02640 ATGTCAGAATATCTCTTTGTTGAAGGTGTTGAGAGTAGAAAGTTTAAGCGCAAGATTGAGGAAGCATCTTCCACTGATGTTGTAGATTCAGAGTTGTTTCTATCTCTTAGTCATGGCAATAAAAGAATGGTTGATGAATCCTCCTCCAAGTTCATCCACAAATCATTGAAAAGCCATAAGGATGCACCAAGTTTTGCTCCAAAACTTGTGGAAAACACTAATAATCAATTGATCGTTCCTACACAACGCAAATTCTCTTGCAAGTTTTGCAATAAGAAATTCTCAAGTTGTCAAGCTCTTGGGGGGCACCAAAATGCTCATTGGCGTGAAAGGGTGCTTCTAAGGATGGATAGAGAATTTGATAAGGGAATTGTCGGACTTGGTGCTTGCATGTGCCCATACTCATCCCTAGCACATCACCATCCCGTTCATGGCCCAATGCCCCTTTATTATGGGACAAACATTCCCCCCATGGCTCACATGTCAACCATGTCGTGGTCTCATTTTGTACCTGGCTATGGCAATCACGGGTTGCACAACACATCCATCTCAGGGCAACAATTTGGGATGACCAACCCTTGGGGGGTGGTTGCTGAAACTCAACAAAATGTAACTAATAGAGCTACCATGTCTCATTCTGGTCCTAGTGTCCTTTTAGGAAATCAGTATACTGAGAACCAACAATTTTCATCCTCAAGGCCAGATTTATCCCTCAGCCTTTAA 723 0.426 MSEYLFVEGVESRKFKRKIEEASSTDVVDSELFLSLSHGNKRMVDESSSKFIHKSLKSHKDAPSFAPKLVENTNNQLIVPTQRKFSCKFCNKKFSSCQALGGHQNAHWRERVLLRMDREFDKGIVGLGACMCPYSSLAHHHPVHGPMPLYYGTNIPPMAHMSTMSWSHFVPGYGNHGLHNTSISGQQFGMTNPWGVVAETQQNVTNRATMSHSGPSVLLGNQYTENQQFSSSRPDLSLSL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02640 240 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Pumo3g02640 240 MobiDBLite consensus disorder prediction 210 240 - -
Pumo3g02640 240 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 32 201 IPR044246 GO:0009788
Pumo3g02640 240 Gene3D Classic Zinc Finger 69 122 - -
Pumo3g02640 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Pumo3g02640 240 Pfam C2H2-type zinc finger 85 110 - -
Pumo3g02640 240 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02640 Pumo-Chr3 40730747 40731469 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02640 83 240 C2H2 Transcription Factor Family AT1G24625 31.638 3.24e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02640 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02640 - - gmx:102663144 291.197