Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02638 ATGTCAGATGAACTTTTTGTTGGAGGTGTTGAGAGTAGAAAGCTCAAGCGTAGGATTGAGGAGGCATCTTCCACAGATGCTGTAGATTCAGAGTTCTTACTGTCTCTGAGTCTTGGCAATAACAAAATAGTTGGTGAATCCTCCTCTAATTTCTTATGTAAGTCATTGAAAAGCCATAAGGAGTCGCCAGGTTTTGCTTCAAAACTTATGGAAAACACTAGTCATCAGGTGATTGTGCCTAAGCAGCGCCAATTCTCTTGCAAGTTTTGTGATAAGAAATTTCCAAGCTCTCAGGCTCTAGGAGGACACCAAAATGCTCATAGGCGTGAAAGAGTTCTATCAAGGATGGATAAAGATATGGGAACTTTTGGACTTGGTGCCCACATGTGCTCATACTCATCCATTCCATATCATCATCCCTTTCGTGGACCAATACCCCCTTATTATGGGGCTAACATGAACCCCATGGCTCACATGTCGACCATGCCTTGCCCACATTTTGCACCTAGCTTTGGCAACCAAGGGTTGCACAACATATCCATCTTAGGGCAACGATTTGGGATGACTAACCCTTGGGGTATAGCTGCTGAAACTCCACAAACTGTGTATCTCAGGGATGTGGGATTTGGTTCTGAACATAATCAAGTTCCTTCACTTGATGTAGCTCATAGAGCTACCATGGCTCGTTCTAATCTTAATAGCCTTTTGGGAAACCAATATACTAGGAACCAATAA 735 0.4299 MSDELFVGGVESRKLKRRIEEASSTDAVDSEFLLSLSLGNNKIVGESSSNFLCKSLKSHKESPGFASKLMENTSHQVIVPKQRQFSCKFCDKKFPSSQALGGHQNAHRRERVLSRMDKDMGTFGLGAHMCSYSSIPYHHPFRGPIPPYYGANMNPMAHMSTMPCPHFAPSFGNQGLHNISILGQRFGMTNPWGIAAETPQTVYLRDVGFGSEHNQVPSLDVAHRATMARSNLNSLLGNQYTRNQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02638 244 Gene3D Classic Zinc Finger 56 122 - -
Pumo3g02638 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Pumo3g02638 244 Pfam C2H2-type zinc finger 85 110 - -
Pumo3g02638 244 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Pumo3g02638 244 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Pumo3g02638 244 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 215 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02638 Pumo-Chr3 40706834 40707568 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02638 81 138 C2H2 Transcription Factor Family AT5G10970 44.828 1.63e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02638 zf-C2H2_6 4.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02638 - - gmx:102663144 415.231