Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02628 ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATTTATGATTATTTGGTGAAGAAAAAGTTGCATAACACTGCTAAAGCATTCATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCGAGGACAAATGAGAAACATTCTGAGACTGCTGCAGCATATTTAGAGGCACAACAGAATAAAGCAAAAGAACAACAGCAACTGACAATGCAGCAGTTGCAATTAATTCGTCAAGCTCAAATGCAAAGGAGGGATCCTAATCATCCTCCCCTTGGAGGTCCTGTAAATGCTATCACTTCAGAAGGAGTGCTTGGGCAATCTACTGCCAGTGCTTTGGCTGCAAAAATGTATGAGGAGCGGATGAAGCACTCTAACCCCATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCGGGTCAGATGGTTCAAGGAAATTCAGGAAGTGTGACGGCAGCTTTGCAGCAAATCCAGGCTCGAACTCAGCAAACCCCTCAGGATATCAAACCTGAAGTCAACATGGGTACCATGCAGAGATCCTTGCCTATGGATCCTTCATCAATTTACGGGCAGGGAGGAATGCAGTCAAAGCCTGGAATTGCAAATGCAGGATTGAATCCAGGAGTTGGTAGTCTCACATTGAAAGGATGGCCTTTAACTGGCATTGATCAAATTCGTCCTGGTGGTTTTGGAGCACCAGTTCAGAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCGCAACAACAACAACAACAGCTCCTTGCACAGGTACAGGCACAAGGAAATATTGGCAATTCTCCAGTTTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGAAGTTTGAATGCTAAAGATGGTCAATCAATTGCAAATGATGGATCAATAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATCCAACAATCCACCTCCCAGCAACAGCAGGATCCTTTGCACCCACAACAATTGGTGCAGAATAATCGGAAACGGAAGGGGCCTACATCTTCAGGACCTGCCAACAGTACTGGTACAGGAAATACACTTGGCCCTTCTAATTCTCAGCCATCAACTCCATCGACTCATACTCCTGGTGATGGAGTTGCTATGGCGGGTAACTTGCAGAATGTTGCTGGTGTATCCAAAGGTTTGATCATGTATGGTACTGATGGAGCAGGTGGTCTTGCATCTTCCACAAATCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGAGGATAATGTGGAATCATTTCTCTCACAGGATGATGGTGATGGAAGGGACTTGTTTGGCACATTAAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCTAAAGGCTTTTCCTTCAGTGAAGTTGGTTCCATACGCAAAAGCAACAGCAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCTAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACAGAAAGCACTCCGGAGGAACACAGTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCAACTCAGTTGGCAACATCTTCATTTGATACAACTGTGCGGCTGTGGGATGCTGCAGATCCAACCTTTTCTTTACAGGCATATAGTGGTCATACTTCACATGTGGTGTCCCTTGATTTCCATCCAAAGAAAAATGAACTCTTCTGTTCTTGTGACAATAACAATGAGATTCGCTTCTGGAATATTAGCCAATATTCTTGCACTCGTGTTTTTAAGGGAGGTTCTACACAGGTGAGGTTTCAGCCAAGGCTTGGTCACCTTCTGGCTGCAGCAAGTGGCAGTGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGCAGATGCACACATTTCAGGGACACTCTGCAGAGGTCCACTGTGTCTGTTGGGATACAAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTGTGGTCACTTGCATCTGGGGAGTGCATTCATGAACTTAATTTCAATGGAAACATGTTTCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGATACCAGTCATTGGAGCTATGGAACATGACTGAGAATAAATGTATGACAATTCCAGCTCATGAGTGTGTGATATCTGCTCTAGCACAATCACCGGTGACAGGGATGGTTGCTTCTGCCAGTCATGACAAATCTGTTAAGATTTGGAAATAA 2364 0.4382 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKAFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSETAAAYLEAQQNKAKEQQQLTMQQLQLIRQAQMQRRDPNHPPLGGPVNAITSEGVLGQSTASALAAKMYEERMKHSNPMDTETSQPLLDARMALLKSTNHPGQMVQGNSGSVTAALQQIQARTQQTPQDIKPEVNMGTMQRSLPMDPSSIYGQGGMQSKPGIANAGLNPGVGSLTLKGWPLTGIDQIRPGGFGAPVQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNIGNSPVYGDMDPQRLRGLARGSLNAKDGQSIANDGSIGSPMQSTSSKINMPQIQQSTSQQQQDPLHPQQLVQNNRKRKGPTSSGPANSTGTGNTLGPSNSQPSTPSTHTPGDGVAMAGNLQNVAGVSKGLIMYGTDGAGGLASSTNQLLQDDMEHFGDVGSLEDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKGFSFSEVGSIRKSNSKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTESTPEEHSLIITDVRFRPNSTQLATSSFDTTVRLWDAADPTFSLQAYSGHTSHVVSLDFHPKKNELFCSCDNNNEIRFWNISQYSCTRVFKGGSTQVRFQPRLGHLLAAASGSVVSLFDVETDRQMHTFQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGECIHELNFNGNMFHSCVFHPSYSTLLVIGGYQSLELWNMTENKCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02628 787 MobiDBLite consensus disorder prediction 325 409 - -
Pumo3g02628 787 Gene3D - 482 639 IPR015943 GO:0005515
Pumo3g02628 787 Pfam LisH 10 36 IPR006594 GO:0005515
Pumo3g02628 787 Pfam WD domain, G-beta repeat 669 704 IPR001680 GO:0005515
Pumo3g02628 787 Pfam WD domain, G-beta repeat 588 624 IPR001680 GO:0005515
Pumo3g02628 787 Pfam WD domain, G-beta repeat 754 787 IPR001680 GO:0005515
Pumo3g02628 787 Pfam WD domain, G-beta repeat 511 538 IPR001680 GO:0005515
Pumo3g02628 787 Pfam WD domain, G-beta repeat 547 580 IPR001680 GO:0005515
Pumo3g02628 787 Gene3D - 640 787 IPR015943 GO:0005515
Pumo3g02628 787 SMART Lish 8 40 IPR006594 GO:0005515
Pumo3g02628 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 713 IPR001680 GO:0005515
Pumo3g02628 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 548 580 - -
Pumo3g02628 787 SUPERFAMILY WD40 repeat-like 500 787 IPR036322 GO:0005515
Pumo3g02628 787 CDD WD40 502 787 - -
Pumo3g02628 787 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 787 IPR044716 GO:0003714
Pumo3g02628 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 755 787 - -
Pumo3g02628 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 580 IPR001680 GO:0005515
Pumo3g02628 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 506 547 IPR001680 GO:0005515
Pumo3g02628 787 SMART WD40_4 541 580 IPR001680 GO:0005515
Pumo3g02628 787 SMART WD40_4 584 624 IPR001680 GO:0005515
Pumo3g02628 787 SMART WD40_4 748 787 IPR001680 GO:0005515
Pumo3g02628 787 SMART WD40_4 627 663 IPR001680 GO:0005515
Pumo3g02628 787 SMART WD40_4 666 704 IPR001680 GO:0005515
Pumo3g02628 787 SMART WD40_4 499 538 IPR001680 GO:0005515
Pumo3g02628 787 SMART WD40_4 707 746 IPR001680 GO:0005515
Pumo3g02628 787 ProSitePatterns Trp-Asp (WD) repeats signature. 525 539 IPR019775 -
Pumo3g02628 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 591 626 - -
Pumo3g02628 787 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 506 541 - -
Pumo3g02628 787 MobiDBLite consensus disorder prediction 322 415 - -
Pumo3g02628 787 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pumo3g02628 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 755 787 IPR001680 GO:0005515
Pumo3g02628 787 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 633 IPR001680 GO:0005515
Pumo3g02628 787 PRINTS G protein beta WD-40 repeat signature 774 787 IPR020472 -
Pumo3g02628 787 PRINTS G protein beta WD-40 repeat signature 525 539 IPR020472 -
Pumo3g02628 787 PRINTS G protein beta WD-40 repeat signature 567 581 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02628 Pumo-Chr3 40316351 40335176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02628 500 749 U-box Gene Family AT2G33340 27.407 6.18e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pumo3g02628 WD40 0.0095 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02628 - - gmx:100797756 1478