Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02622 ATGTACGGTGGTGGCGCTGAAGCTGAATCCGAATCTGAATCTGAGCGCAACAGAATGGTTGCTGGTGGTGGTGAGGAAGAACAGGGCTCGTTCAAGAGCTGGGCCAAACAAACGGAGGAGAGCTATCAGTTGCAGCTCGCACTCGCGCTTCGTCTTTCTTCTCATTCCGCTTCTTCTTCAGATCAACCTTCTTCTTCGGCCCAGACGCTCTCGCACCGGTTTTGGGTAAATGGTTATTTGCAATACTCTGACAAAATTATAGATGGATTTTACCTAATCCATGGGATGGATGCATATACATGGACTATAAGTACTGATCTGCAGAATGTTGGTATGATTCCATCATTTGAATCGCTGATGTCAGTTGAACCTGGCGATGACTCGTCAATTGTAGTGGTTGCTGTTGATAAATCTAGAGATCCTTGTTTGAGAGAACTGCAAAATAGGGTAGCAAGTGTTTCAAATAACTGGATTACCACGAAAGATGCAACTGATCAGCTTGCAAATCTTGTTTGCAATAGGATGGGGGGAGGATCCTTAAGTGAGGAAAATTTAGGTACACGCTGGAAGGAACGCTCTCAACTTCTTAAAAGCTGCCTGCATTCGGTCATTCTTCCAATTGGAATCTTACCCATTGGCCTTTGTGTGCATCGAGCATTGTTGTTTAAAGTGTTGGCTGACTTAATCAATCTACCATGCCGTATTGCAAAGGGCTGCAAGTATTGTAGGAAGGATGTGGGTGCTTCATGTATAGTGCAATTTGATTCTGACAGGGAGTATATGATTGATTTAGTTGGAAGGCCTGGGGCAACATGCCAACCTGATTCTTCACTGAATTCTGCATCTTCAATGTTGGTTCCTTCACCATTATGTCATCCAAAGTTCAAGCCAGTTGAAACAGCCGAATATACAAAGACACTAGCCCAATTGTATTTCTTGGACAGTCAAGCACTGCATCTTGTATTTGATACCACATCAGGACCTGCTGTTAATCATAGTGGCAGAATGGATCTACAGCAAACTGAAGTTCTGGCTGCAAATTATGCTGGTGGAAACAGCCATCTGATTGCTTTGATTCCTGGTGCAGAGGAATATGAGTCTTTCAATGAAGCAGAACAGTCAATAATGGATTATCCAAGTCATGAAGTTGATCTTGACGAGGAGGATCTGGATATTCCATGGAGTGAACTTACTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTCCTTCGTGCGGACTGGCGTGGTTCTGATGTTGCTGTGAAGATTCTTAAAGTGCAAGGTTTTGATCCTGGACGATTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTCCGGCATCCAAATATTGTACTTTTGATGGGTGCAGTTATTCAACCCCCAAAGTTATCAATAGTAACAGAATATTTATCAAGAGGCAGTTTGTATGAACTTCTGCACATGCCCAATGTTGGATCATCACTTAGTGAGAAGCGTCGTTTAAGTATGGCTTATGATGTTGCAAGCGGAATGAATTATCTTCATCAAATGAGACCTCCTATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGTATGTGACTTTGGCCTTTCACGTACAAAGGCAAACACATTTCTTTCATCTAAAACCGCTGCCGGAACTCCTGAATGGATGGCACCTGAAGTCATCCGAGGAGAACTGTCAAACGAAAAATGTGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTAGTGACCCTGCAACAACCATGGAGACAATTAAATCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGGCAAAAGGCTAGAGATTCCAAGGCAAGTGAATCCTCAAGTGGCTGCCTTGATTGAGCTCTGCTGGGCCACTGCCATGGCCGCCATGGCAGAATGGTGTGGTAGATTTTATACCAACCGCCATAAGAAATTTGTGAAGGGAGCCCCGCTATGGCGACACCATAGGTTGCAATGGCGTGTTTATATGGTGGAATTTTGGCCTTCTGCCATCTGTCATTGA 2055 0.4355 MYGGGAEAESESESERNRMVAGGGEEEQGSFKSWAKQTEESYQLQLALALRLSSHSASSSDQPSSSAQTLSHRFWVNGYLQYSDKIIDGFYLIHGMDAYTWTISTDLQNVGMIPSFESLMSVEPGDDSSIVVVAVDKSRDPCLRELQNRVASVSNNWITTKDATDQLANLVCNRMGGGSLSEENLGTRWKERSQLLKSCLHSVILPIGILPIGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDVGASCIVQFDSDREYMIDLVGRPGATCQPDSSLNSASSMLVPSPLCHPKFKPVETAEYTKTLAQLYFLDSQALHLVFDTTSGPAVNHSGRMDLQQTEVLAANYAGGNSHLIALIPGAEEYESFNEAEQSIMDYPSHEVDLDEEDLDIPWSELTLKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDPGRFEEFLKEVSLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLHMPNVGSSLSEKRRLSMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGELSNEKCDVFSFGVILWELVTLQQPWRQLNPSQVVAAVGFMGKRLEIPRQVNPQVAALIELCWATAMAAMAEWCGRFYTNRHKKFVKGAPLWRHHRLQWRVYMVEFWPSAICH 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02622 684 ProSiteProfiles Protein kinase domain profile. 397 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02622 684 Gene3D Phosphorylase Kinase; domain 1 390 475 - -
Pumo3g02622 684 FunFam PAS domain-containing protein tyrosine kinase family protein 475 642 - -
Pumo3g02622 684 MobiDBLite consensus disorder prediction 1 36 - -
Pumo3g02622 684 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 40 636 - -
Pumo3g02622 684 Pfam Ethylene-responsive protein kinase Le-CTR1 67 270 - -
Pumo3g02622 684 SMART serkin_6 397 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02622 684 SUPERFAMILY Protein kinase-like (PK-like) 378 636 IPR011009 -
Pumo3g02622 684 PRINTS Tyrosine kinase catalytic domain signature 512 530 IPR001245 GO:0004672|GO:0006468
Pumo3g02622 684 PRINTS Tyrosine kinase catalytic domain signature 578 600 IPR001245 GO:0004672|GO:0006468
Pumo3g02622 684 PRINTS Tyrosine kinase catalytic domain signature 471 484 IPR001245 GO:0004672|GO:0006468
Pumo3g02622 684 PRINTS Tyrosine kinase catalytic domain signature 559 569 IPR001245 GO:0004672|GO:0006468
Pumo3g02622 684 FunFam Serine/threonine-protein kinase isoform 1 387 475 - -
Pumo3g02622 684 CDD STKc_MAP3K-like 403 636 - -
Pumo3g02622 684 ProSitePatterns Protein kinases ATP-binding region signature. 403 424 IPR017441 GO:0005524
Pumo3g02622 684 Gene3D Transferase(Phosphotransferase) domain 1 476 646 - -
Pumo3g02622 684 Pfam Protein tyrosine and serine/threonine kinase 397 637 IPR001245 GO:0004672|GO:0006468
Pumo3g02622 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02622 Pumo-Chr3 39787666 39799426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02622 34 636 MAP Kinase Kinase Kinase AT5G03730 59.019 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Pumo3g02622 PK_Tyr_Ser-Thr 7.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02622 K14510 - gmx:100807496 1142.1