Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02614 ATGGAAGAAACAACATCATCAACCATCATCATGGCTGCACTCTCCACCCTCACCCCTTCCCAATTCTCAGATCTCACCCACACCATTCTCTCCGCCACCAACCACCACCATCGCCGCCTTGCCTCCCTCCTCTCCTCCCCAACGCTCTTCTCTCTAACCCTTCACCATCTCCACACCCTCTCCCTCCCCCAGAAGACCGTCCTCATCGCCCGCCACCTCCTCTCCTCCCTCCACCTCCTCACCGCCACGTCGCCGCCTCTGTCCACCGCCACACGGCAGCGCGACCTCGACCCCTCGCTGCTCCTCCTCCTCCTCTGCGAAACGCACAACCACAACCCGCTAGCCCTCGAGGCACCCGTTTCCGAATGGAGAAAAAACTTGAGCAACGTCTTCTCCGATTCATTGTTAAGTCTGTCTTTTGCACCCGTTGGGGCATATGCGGTTACGATTTCCTTCGTTGAGACGGTATCCCGGTGCTGGAGACTCGTCGGTGCGCTGGACTGCGGCGGAGGGAAGGAGGCGGGGGAGGTGGCGGCGTCGGCGGCGACGGTGGTGGCGCTGCCGTCGGTGGAGGTGAGGCTCGGTGGGAGAGAGTGCGTGATATGCAAAGAGGAGATGGGAATAGGGAGGGACGTGTGCGAGTTGCCATGTCAGCACTTGTTTCATTGGATGTGTATTTTGCCGTGGCTGGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTCCGGTTACCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTGTGGGAAGTCTTGGTTAAAATGGCCGCAAAAGATTCATAG 804 0.5896 MEETTSSTIIMAALSTLTPSQFSDLTHTILSATNHHHRRLASLLSSPTLFSLTLHHLHTLSLPQKTVLIARHLLSSLHLLTATSPPLSTATRQRDLDPSLLLLLLCETHNHNPLALEAPVSEWRKNLSNVFSDSLLSLSFAPVGAYAVTISFVETVSRCWRLVGALDCGGGKEAGEVAASAATVVALPSVEVRLGGRECVICKEEMGIGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKMAAKDS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02614 267 SUPERFAMILY RING/U-box 194 245 - -
Pumo3g02614 267 CDD RING-H2_PA-TM-RING 198 240 - -
Pumo3g02614 267 ProSiteProfiles Zinc finger RING-type profile. 199 240 IPR001841 -
Pumo3g02614 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 131 244 - -
Pumo3g02614 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 246 IPR013083 -
Pumo3g02614 267 Pfam Ring finger domain 198 240 IPR001841 -
Pumo3g02614 267 SMART ring_2 199 239 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02614 Pumo-Chr3 39400868 39402349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02614 3 261 C3H Transcription Factor Family AT5G02750 50.909 4.62e-79 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02614 - - gmx:100810879 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02614 3 39400868 39402349 Pumo3g02614 3 39400868 39402349 ECH