Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02600 ATGCTCTCTCTTCCTTACAGCCACGTCGACACCAGTCTCCGCGCCCTCGCCGCCCAAGCCGAGGGCTTCGGTCGCTTCGCCATCGGCGGCCTCCACGGTCCCCTTTTCCACGTCACTTCCCTCGCAGATGATGGACCGGGGTCGCTGCGTGACGCGTGTCGCAGGAAAGAACCTCTGTGGATCGTGTTTGAGGTTTCCGGCACCATTCATCTCTCCTCGTACTTGAACGTCTCATCTCACAAGACCATCGACGGTCGTGGCCAGAGGATTAAACTCAGCGGAAAAGGTTTGCGGCTGAAGGAATGCGAGCACGTGATAATTTGCAATTTGGAGTTCGAAGGAGGCAGAGGGCATGATGTTGACGGCATTCAGATCAAACCTAATTCCAAGCACATATGGATTGACCGTTGCTCGCTCAGTGATTTTGATGATGGGCTCATAGATATCACCCGAGAAAGCACGGACATTACTATTTCGAGGTGTCACTTCTCTCAGCATGACAAAACCATGCTCATTGGGGCTGATCCCTCGCACCTTGGAGATAGGTGCGTGAGGGTCACTATACACCATTGTTTTTTCAATGGGACTCGACAGAGGCACCCTCGTGTTAGGTTTGCGAAAGTGCATCTCTACAACAATTATATCAGAAACTGGGGCATTTATGCTGTTTGTGCTAGTGTGGAAGCTCAGATATTCTCGCAACATAATATCTATGAAGCAGGACAGAAGAAGGTGGCATTTAAGTATCTTACGGAGAAGGCAGCAGACAAGGAAGTGGGAGCAACTGGTATCATAAGGTCCGAAGGAGACATATTCTTAAATGGTGCTCAACCAGGGTTAATGACTGAGGATGTTGGGTGCAACATGTTTCACCCCAGTGAACACTATCCCTCTTGGACAGTGGAAGCCCCTACAGACGATCTAAAACAGATTCTTCATCACTGCACTGGATGGCAATCTCTTGCTAGGCCAGCAGATCAAACTGTATGA 990 0.499 MLSLPYSHVDTSLRALAAQAEGFGRFAIGGLHGPLFHVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLNVSSHKTIDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHLGDRCVRVTIHHCFFNGTRQRHPRVRFAKVHLYNNYIRNWGIYAVCASVEAQIFSQHNIYEAGQKKVAFKYLTEKAADKEVGATGIIRSEGDIFLNGAQPGLMTEDVGCNMFHPSEHYPSWTVEAPTDDLKQILHHCTGWQSLARPADQTV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02600 329 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Pumo3g02600 329 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Pumo3g02600 329 PRINTS Pollen allergen Amb family signature 74 90 IPR018082 -
Pumo3g02600 329 SMART amb_all 46 244 IPR002022 -
Pumo3g02600 329 PANTHER PECTATE LYASE 18-RELATED 9 277 IPR045032 GO:0030570
Pumo3g02600 329 Pfam Pectate lyase 74 237 IPR002022 -
Pumo3g02600 329 Gene3D - 6 313 IPR012334 -
Pumo3g02600 329 SUPERFAMILY Pectin lyase-like 19 324 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02600 Pumo-Chr3 39207897 39211062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02600 41 329 Polysaccharide Lyase AT3G55140 77.509 2.18e-175 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02600 K01728 - gmx:100814368 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02600 3 39207897 39211062 Pumo3g02600 3 39207897 39211062 ECH