Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02589 ATGTTGCTCTCTCATCCCAGAGAAATCAAACCCCGAAAACTTTTGGGCCATCAAGAATTTGAGTGTATGACATGCAACCGCAAGTTCTCTTCATTTCAAGCCCTAGGTGGCCACAGGGCCAGCCACAAGAAACCCAAAACTCTGAGGTTGGGGAATAAGCCCAAAACGCACGAGTGCTCCATTTGTGGTAAGGAATTCACTTTGGGCCAGGCACTGGGAGGGCACATGAAAACGCACAGAATTACCGTTGACCAAGGGTTTTCTTCAATAAACCAGGTTGTTGCAAAAGTCCCGGTTCTTAAAAGGTCGAATAGCATGAGGGTTATGTACTTGGACTTGAACTCGACTCCTCTGCAGAATGACTTGAAGTTATTGTTTGGAGACAAGGCACCCAAAGTTGACTCCTTCGTCTGA 414 0.4662 MLLSHPREIKPRKLLGHQEFECMTCNRKFSSFQALGGHRASHKKPKTLRLGNKPKTHECSICGKEFTLGQALGGHMKTHRITVDQGFSSINQVVAKVPVLKRSNSMRVMYLDLNSTPLQNDLKLLFGDKAPKVDSFV 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02589 137 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Pumo3g02589 137 FunFam Zinc finger protein 52 80 - -
Pumo3g02589 137 Pfam C2H2-type zinc finger 57 81 - -
Pumo3g02589 137 Pfam C2H2-type zinc finger 20 45 - -
Pumo3g02589 137 PANTHER ZINC FINGER PROTEIN ZAT5 16 120 - -
Pumo3g02589 137 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Pumo3g02589 137 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 47 IPR013087 -
Pumo3g02589 137 SUPERFAMILY beta-beta-alpha zinc fingers 20 79 IPR036236 -
Pumo3g02589 137 SMART c2h2final6 20 42 IPR013087 -
Pumo3g02589 137 SMART c2h2final6 57 79 IPR013087 -
Pumo3g02589 137 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Pumo3g02589 137 Gene3D Classic Zinc Finger 17 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02589 Pumo-Chr3 39049152 39049565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02589 1 134 C2H2 Transcription Factor Family AT2G37430 48.026 3.53e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02589 zf-C2H2_6 1.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02589 - - gmx:100793243 234.572