Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02583 ATGGTAGCCATTCTGAAGAGACAGAGAGAGAACGAATCCCTAGAGAGCATAGACTTGGCAAAGAGTCTCATCCTACTCTCGCGTGTCCAACAAAGCAAACCTCTTCTCAAGAGTTTTTCCCCAGTGGAGTTCGAGTGCAAGACGTGTAACCGCAAGTTCTCGTCGTTTCAGGCCCTCGGAGGCCACAGGGCCAGCCACAAGAAGCCCAAGTTCGAAGGGGAAGATCTCAAGGAAGAGGCCAAGGCTCTGAGTCTGGGGAACAAACCCAAAATGCACGAGTGTTCCATTTGTGGCCAGGAATTCTCTCTGGGCCAGGCGCTGGGGGGTCACATGAGAAAGCACAGGGGTGCCATCAGTGAGAATAATAACGTTGAAGCGTTTCCTTCTTCTATAAACCAAGCAATTGCGAAAGCCCCGGTTTTGAAACGATCGAATAGCAAGAGGGTCATGTGCTTGGAGCTGGACCTGAACCTAACGCCATTGGAGAATGACTTGAAGTTGCTGTTCGGAAACAAGGCTCCTAGAGTCGATCTTTCTTTGTAG 543 0.5028 MVAILKRQRENESLESIDLAKSLILLSRVQQSKPLLKSFSPVEFECKTCNRKFSSFQALGGHRASHKKPKFEGEDLKEEAKALSLGNKPKMHECSICGQEFSLGQALGGHMRKHRGAISENNNVEAFPSSINQAIAKAPVLKRSNSKRVMCLELDLNLTPLENDLKLLFGNKAPRVDLSL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02583 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Pumo3g02583 180 Pfam C2H2-type zinc finger 44 69 - -
Pumo3g02583 180 Pfam C2H2-type zinc finger 92 116 - -
Pumo3g02583 180 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Pumo3g02583 180 Gene3D Classic Zinc Finger 42 114 - -
Pumo3g02583 180 PANTHER ZINC FINGER PROTEIN ZAT5 18 164 - -
Pumo3g02583 180 SMART c2h2final6 92 114 IPR013087 -
Pumo3g02583 180 SMART c2h2final6 44 66 IPR013087 -
Pumo3g02583 180 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Pumo3g02583 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Pumo3g02583 180 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02583 Pumo-Chr3 38956038 38956851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02583 5 178 C2H2 Transcription Factor Family AT2G37430 50.543 1.57e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02583 zf-C2H2_6 2.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02583 - - gmx:100526874 301.982