Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02582 ATGAAGAGACAGAGAGAGAATGAAGGAACAACCTTAGAAAGCTGGGACATGCAAAATTGTTTAATCACACCCGAAACAACAAGCGTATCCACCACATCCCCTCAAGTGTTTGAGTGCAAAACGTGCAACCGTAAATTCTCTTCATTTCAAGCACTGGGTGGCCACAGGGCAAGTCACAACAAGAGGGTCAAGTTAGAAGGAGAAGAACAACTCAAAACAAGAGCCAAATCTCTGGGCCTGGGAAAACGGAGTGAGCCCAAATTGTACGATTGCTCCATTTGTGGTCAGGGTTTCTCTCTGGGCCAGGCCCTGGGAGGACACATGAAAAGGCACAGAGCTGCGACCAACGAAGTTTTCTCTTCCATAAACCAGGTTGTTGCAAAAGTTTCGGTCTTAAAGAGATCGTGTAGTGACAAGGTTTTCTGCTTGGACCTCAACTTAACTCCTCTTGAGAATGACTTGAAGTTAATGTTGTTCGGGAAAGTGTCACCTAAAGTTAATCTTTCTTCCTTTTGA 516 0.4477 MKRQRENEGTTLESWDMQNCLITPETTSVSTTSPQVFECKTCNRKFSSFQALGGHRASHNKRVKLEGEEQLKTRAKSLGLGKRSEPKLYDCSICGQGFSLGQALGGHMKRHRAATNEVFSSINQVVAKVSVLKRSCSDKVFCLDLNLTPLENDLKLMLFGKVSPKVNLSSF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02582 171 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Pumo3g02582 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Pumo3g02582 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Pumo3g02582 171 Gene3D Classic Zinc Finger 65 140 - -
Pumo3g02582 171 SMART c2h2final6 89 111 IPR013087 -
Pumo3g02582 171 SMART c2h2final6 37 59 IPR013087 -
Pumo3g02582 171 SUPERFAMILY beta-beta-alpha zinc fingers 36 111 IPR036236 -
Pumo3g02582 171 Pfam C2H2-type zinc finger 36 61 - -
Pumo3g02582 171 Pfam C2H2-type zinc finger 89 113 - -
Pumo3g02582 171 PANTHER ZINC FINGER PROTEIN ZAT5 16 153 - -
Pumo3g02582 171 Gene3D Classic Zinc Finger 34 57 - -
Pumo3g02582 171 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02582 Pumo-Chr3 38952627 38953142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02582 1 168 C2H2 Transcription Factor Family AT2G37430 44.444 4.57e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02582 zf-C2H2_6 2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02582 - - gmx:100793782 281.182